Arvicanthis niloticus (African grass rat): 117706229
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Entry
117706229 CDS
T08817
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117706229 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117706229 (Sf3b1)
03036 Chromosome and associated proteins [BR:
anu03036
]
117706229 (Sf3b1)
Spliceosome [BR:
anu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117706229 (Sf3b1)
Complex B
117706229 (Sf3b1)
Complex C
U2 SnRNP specific factors
117706229 (Sf3b1)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117706229 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
117706229
NCBI-ProteinID:
XP_034355008
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All DBs
Position
3:127294016..127330837
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AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatatagaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccactggttattatgac
caagaaatttatggtggaagtgatagcagattcgctggatatgtaacatcgattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagcttgcttggtcagaag
aagcccggatatcatgcccccgtggcattgcttaatgatataccacagtcaacagaacag
tatgacccatttgctgagcatcgtcctccaaagattgcagaccgggaagatgaatacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgaccctaaaatgaatgctagaacctacatggatgttatgcgagaacaacat
ttgactaaggaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaacggagcagcagcatcccagcctccctcaaaacgaaaacggcgctgg
gatcaaaccgctgaccaaactcctggtgccactcccaaaaagctatcaagttgggatcag
gcagagacccctgggcataccccttctttaagatgggatgagacaccgggtcgtgcaaaa
ggaagtgaaacacctggagcaaccccaggctcaaaaatatgggatcctacacctagtcac
acaccagcgggagccgccactcctggacgaggggatacgccaggccatgcaaccccaggc
catggtggtgcaacttccagtgctcgcaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcggacagatcgaggtgga
gactctattggtgaaacaccaactcctggagcaagtaaaagaaagtctcgttgggatgaa
acgccagctagtcaaatgggtggaagcactcctgttctgactccaggaaaaacaccaatt
ggcacaccggccatgaacatggctacacccactccaggtcacataatgagcatgactcct
gagcagcttcaagcttggcggtgggagagagaaattgatgagcgaaaccgcccactttct
gatgaagaattagatgctatgttcccagaaggatataaggtgctcccgcctccagccggt
tatgttcctattcgaactccagctcgaaagttgacggcaactcccacacctttgggcggg
atgactggtttccacatgcaaactgaagacagaactatgaaaagtgtcaatgaccagcca
tctgggaatcttccatttttaaaacctgatgacattcagtactttgataaactattggtt
gatgtagatgaatcaacacttagtccagaagagcaaaaagaaagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgccttacgtcagatcact
gataaagctcgagaatttggagctggaccactgtttaaccagattcttcctctgttgatg
tcccctacacttgaggatcaagagcgacacttacttgtgaaagttattgatagaatattg
tataaacttgatgacttggtgcggccctatgtgcacaagattctcgtggttatcgagcca
ctgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagaccggatatagataacatg
gatgaatatgtccgaaacacaacagctagagcttttgctgtcgtagcctctgccctgggc
attccttctttattgcctttcttaaaagctgtgtgcaaaagcaagaaatcttggcaagca
aggcacactggtattaagattgtacagcagatagccattctcatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtctcgtggatgagcagcagaaa
gtgcggactatcagtgctctggccattgctgctttggctgaggcagcaactccttatggt
attgagtcttttgattctgtgctcaagcccctatggaagggtatccgccaacatagagga
aagggtctggctgctttcttgaaggctattgggtatcttattcctcttatggatgcagag
tatgccaactactatactagagaagtgatgttaatccttattcgagaattccagtcccct
gatgaagaaatgaagaaaattgttttgaaggtggtgaaacagtgttgtggaactgatggt
gtagaagcgaactacatcaaaacagagattcttccacctttctttaaacacttctggcaa
cacagaatggctttggatagaagaaattaccgacagttagtcgacacaactgtggagttg
gcaaacaaagtaggtgcagcagagatcatatctaggattgttgatgatctgaaggatgaa
gctgagcagtacaggaaaatggtgatggaaacaattgagaaaattatgggcaatctaggt
gcagcagatattgaccacaaactcgaggaacagctgattgatggtattctctatgctttc
caagaacagactacagaggattcagtaatgttgaatggttttggcacagtagttaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttgtggcgttta
aataataaatcagcaaaagttaggcaacaagcagctgatttgatttctcgaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtatgaa
tatttgggtgaagaataccctgaagtattgggcagcattctcggagcactgaaggctatt
gtaaacgtaataggtatgcataagatgacaccaccgattaaagatctcctgcctagactc
acccccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttgga
cgcattgctgacaggggagctgaatatgtatctgcaagagagtggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgaagagctaccgtcaataca
tttggttatattgcaaaggctattggccctcatgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtacgacagtagcaatagccattgttgct
gaaacatgttcacccttcacagtactgcctgccttaatgaatgaatacagagttcctgaa
cttaatgttcaaaatggagtgttaaaatcactctccttcttgtttgagtatattggtgaa
atgggaaaagactacatctatgctgtaacgcctttacttgaggatgcattaatggatagg
gaccttgtacacagacagacagctagtgcagtggtacaacacatgtcacttggtgtttat
ggatttggctgtgaagattctctgaatcacttactgaactacgtgtggcctaatgtgttt
gagacatctccccatgtaatccaggcagttatgggagctctggagggcctgagggttgct
attggaccatgcagaatgttgcagtattgcttacagggtctgtttcacccagctcggaaa
gtcagggatgtgtattggaaaatttacaactccatctacattggctcgcaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
