Arvicanthis niloticus (African grass rat): 117706237
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Entry
117706237 CDS
T08817
Symbol
Pcdh8
Name
(RefSeq) protocadherin-8 isoform X1
KO
K16499
protocadherin delta 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117706237 (Pcdh8)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117706237 (Pcdh8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
117706237
NCBI-ProteinID:
XP_034355019
EnsemblRapid:
ENSANLG00005011410
LinkDB
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Position
3:40496646..40501187
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AA seq
1069 aa
AA seq
DB search
MSPAKRWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGTVIGTLAEDLHMKVSGD
TSFRLMKQFNSSLLRVREGDGQLTVGDAGLDRERLCGQSPQCVLAFDVVSFSQEQFRLVH
VEVEVRDVNDHAPRFPRAQIPVEVSESAPVGTRIPLEVPVDEDVGANGLQSVRLAEPHSP
FRVELQTRADGAQCADLVLLQELDRESQASYSLELVAQDGGRPPRSATAALSVRVLDAND
HSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGDVVFTFGARTPPEARHLFRLD
PRSGRLTLAGQVDYERQDTYELDVRAQDRGPGPRTATCKVIVRIRDVNDNAPDISITPLA
APGAPATSPFAAAAAAAALGGTDAASSAGSGTQEAGVTSLVPEGAARESLVALVSTSDRD
SGANGQVRCALYGHEHFRLQPAYAGSYLVVTAASLDRERIAEYNLTLVAEDRGAPPLRTV
RPYTVRVGDENDNAPIFTKPVYEVSVRENNPPGAYLATVAARDPDLGRNGQVTYRLVEAE
VGRSGEAVSTYVSVDPATGAIYALRSFDYETLRQLDVRVQASDGGSPQLSSNALVQVRVL
DQNDHSPVLVHPAPANGSLEVAVPGRSTKDTAVARIQARDADEGSNGELAFDLLQQEPRE
AFSIGRHTGEIVLTGDLSQEPLGRVFKALLVISDGGRPPLTTTATVSFVVTAGGGSAVPA
SAGSPEHSRPPGSRLAPSGPSLQWDTPLIVIIVLAGSCTLLLAAIIAIATTCNRRKKEVR
KGGALREERPGAAGGGASAPGSPDETARGTGPRPNMFDVLTFPGSGKAPFGSPAADAPPP
AVAAAEVPGSEGGSATGESACHFEGQQRLRGAHAEPYGASPGFGKEPAPPVAVWKGHSFN
TISGREAEKFSGKDSGKGDSDFNDSDSDISGDALKKDLINHMQSGLWACTAECKILGHSD
RCWSPSCAGPNVHPPPHPPAQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEKVL
HRDYDRTVTLLSPPRPGRLPDLQEIGVPLYESPPGGRYVSPKKGTNENV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctgcgaagcgctggggcagcccttgccttttccccctgcagctgtttagtctc
tgctgggtgctctcagtggcccagagcaagacagtccgatacagcacctttgaagaggat
gcccctggcacagtcatcgggacccttgcagaagacctgcacatgaaagtgtctggagac
acaagcttccgcctgatgaagcaattcaacagctctctgctccgggtacgcgagggcgac
gggcagctgaccgtcggggatgcgggcctggaccgtgagcgtctgtgtggccagtcccca
cagtgcgtgctggccttcgatgtcgtcagcttctcgcaggaacagttccggctggtgcac
gtggaggtggaggtgagggatgtaaacgaccacgcgccccgctttccccgagcccagatc
ccggtggaggtctcagagagtgctccggtaggcacgcgcatccccctggaggtgcccgtg
gacgaggacgtgggtgccaacgggctgcagagtgtacgcctggccgagcctcacagcccc
ttccgcgtggagctgcaaacgcgggcggacggtgcccagtgtgcggatctggtgctgctc
caggagctggaccgcgagagccaggcctcctacagcctggagctggtggctcaggacggc
gggcgacctccgcgttccgccacagcagccctcagcgtgcgtgtgctagatgccaacgac
cacagcccggccttcccgcagggtgccgtggccgaggtggaattggccgaggacgcacct
gtaggatcgctgctgctcgacctggacgctgccgatcccgacgaaggtcccaacggtgac
gttgtgttcaccttcggcgcccgcacccctcccgaagcccgccaccttttccggctcgac
ccgcgctctggccgcctcaccttggctgggcaggtagactacgagcgccaggacacctac
gagctggacgtgagggctcaggaccgaggcccaggaccccggacagccacctgcaaggtc
atcgtgcgcatccgagacgtcaacgacaacgctcctgatatttctatcacccctctggcc
gccccaggggctccagccacctcgcccttcgccgccgccgccgctgcggccgcactcgga
ggaacggacgccgcctcgtcggctgggtctgggacacaggaagccggtgtcacttcgttg
gtgccagagggggcggcgcgcgagagcctagtggcgctggtcagcacctcggacagggac
tcgggcgccaacgggcaggtgcgctgcgccctctacgggcacgagcactttcggctgcag
ccggcctatgccggcagctacctggtggtgacagccgcttctctagaccgggagcgcatc
gcggagtacaacctgacgctagtggccgaagatcgtggcgcgccccctctgcgaaccgtc
aggccctacaccgtgcgcgtgggtgacgagaacgacaacgcaccgatcttcaccaagcca
gtctacgaggtgtcagtccgagaaaacaaccctccaggagcctacctggccacagtggca
gcccgcgaccctgacctgggccgcaacggtcaggtcacctaccgactggtagaggccgaa
gtgggccgctccggggaagctgtgtccacttatgtctcagtagacccagctaccggggcc
atctacgcgctgcgtagctttgactatgagactctgcgtcagcttgacgtgcgtgtccag
gccagcgacggcggttcccctcagctttccagcaatgctctggtgcaagtgcgtgtgctt
gaccagaatgaccactctccggtcctcgtgcatccggcgccggccaatggctccctagaa
gtagcagtccctggacggtccaccaaggacacagctgtggcgcgcatccaggcccgggat
gcagacgaaggatccaacggggaattggccttcgatctgctgcagcaggagccacgcgag
gccttctccataggccgccacacgggggagatcgtgctcaccggagacctctcccaggag
cctcttggccgcgtgttcaaggccctgctggtcatatccgacggcggccgcccccctctc
accaccacggcaaccgtcagttttgtggtaacagcgggtggcgggtcagctgtacctgcc
agcgccgggagcccagaacattcccggccacctggctctcgcctcgcgccgtcggggcct
tcgctgcagtgggacacgccgctgatcgtcatcatcgtgttagccgggagctgcacactg
ctgcttgcagccatcatcgccatcgccaccacctgcaaccgccgcaagaaggaggtgcgc
aaagggggggccctccgggaagagcggcccggggcggcgggcggcggagcctctgcccct
ggctccccggatgagaccgccaggggaactgggcccaggcccaacatgttcgacgtgctc
accttccctggcagcggcaaagcgccctttggcagccccgcggccgacgcgcccccgccc
gcggtcgccgcggccgaagtgccgggctcggagggcggcagcgccactggggaaagcgcc
tgtcacttcgaggggcagcagcggctccgaggcgcgcacgccgagccctacggtgcctct
ccaggcttcgggaaggagcctgcgccccctgttgcagtctggaagggccactcattcaac
accatctcgggccgagaggctgagaagttcagtgggaaagacagcgggaaaggagacagt
gatttcaatgacagcgactcggacatcagcggggacgctttgaaaaaagacctcatcaac
cacatgcagagtggactgtgggcatgcactgctgagtgcaagatcttaggccattctgat
cgctgctggagcccatcctgtgccggacccaatgtacacccccctcctcacccaccagcc
cagatgtcaaccttctgtaagagcacgtccctgcctcgagaccctctgcgcagggacaat
tactaccaggcccagctccccaagacagtggggctgcagagcgtctatgagaaagtactg
catagagactatgacaggacagtcaccttactctcccctccccgtccaggaaggctccca
gacctgcaggagattggagtacccctctatgagtcccctcctggtggcagatatgtgtcc
ccgaaaaaggggaccaatgaaaatgtgtaa
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