Arvicanthis niloticus (African grass rat): 117707142
Help
Entry
117707142 CDS
T08817
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117707142 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117707142 (Pcf11)
03019 Messenger RNA biogenesis [BR:
anu03019
]
117707142 (Pcf11)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117707142 (Pcf11)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117707142 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
117707142
NCBI-ProteinID:
XP_034356435
LinkDB
All DBs
Position
1:complement(62486540..62512428)
Genome browser
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVPQIPTMAVKTPHQVPVQPDKSRAGPSLQMQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTINQSDIKTNKNVPSEKLNSSKQEKSKSGERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMSKRDPRLKKHLQDKAEGKDEDV
KEKRKTAEKKDKDEHIKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPPSR
EERNTKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRPSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDTDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGGGIRFEGPL
LQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPIVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIESFNQS
GPYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRASGHYFDE
KNLQSSQFGNFGNLPTPMSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNP
SGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQTDSATAQVNEAVTQPPPEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggcggaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttccagttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgcctcctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcctgatgagccttcaacacctggcacagtggtc
agttcccccagtatctccactcctcccattgtacctgatatacagaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctctgagcgtt
cagcaggagacagccaacttgggtcctggatcagcaccgtctaaattacatgttccacaa
attcccactatggctgttaaaactccccatcaggtccctgtacaacctgacaaaagcaga
gcgggtccgtccttacaaatgcaagacttgaaaggaactaaccgggatccccgtcttaac
aggatgagccaacattcttcccatggtaaagagcagagtcataggaaagaatttgtaatg
aacacaataaaccagtctgatattaaaacaaataagaatgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaagtcaccatcacctttgaaaaacaaattatcc
cacacgaaagacttgaaaaatcaagaatctgaaagcatgaggttgtctgatatgagtaag
agagatccacgattaaagaagcatcttcaggataaagctgagggcaaagatgaagatgta
aaagaaaagagaaaaactgcagaaaagaaggataaagatgagcacataaaatcatctgaa
cacaggttgattggaagtagaagtaaaatcataaatggcattgtccagaaacaagacatg
gttacagaagaattggaaaaacagggtacaaaaccagggagatcaagtactagaaagaga
tcaagatcaaggtcacctaagtctcggtcaccaattatacattccccaaagagaagagat
agacggtcaccgaaacgaaggcaaagaagtatgtctcccactttggcacccaaagctgga
aagatgcgtcagtcaggacttaaacagtcacatatggaagaatttccaccaccttccagg
gaagaaagaaatactaagagaagtgcaaagcaggatgttcgagatcccagacgactgaaa
aagatggatgaggaccggcctcaagaaactgcaggtcaacattctatgaagtcaggtggt
gacccaaaagagaatatagagaattggcaaagctctaagtctgcaaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaacctcctcatcta
aggcatagggagagctggtcaagcactaaaggcatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcaaattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctaaagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtccttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaggagcagagatcaccattcaatgat
cgttttccacttaagagacctagatatgaagatacagataaaccatttgtagatggccca
gcatcaagatttgctggtcttgatacaaatcagcgacttacagctctagctgaagaccga
ccattatttgatggacctggtaggccatctgtgacgagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagttaggaggtgggtgccctttgagatttgaaggtcctcctggaccagtagga
acacctctgcggtttgaagggccaattggtcaaggaggaggaggtggttttcgatttgaa
ggctcacctagtctgaggtttgagggatctgcaggtggtttacgatttgaaggaccaggg
ggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaaccagttggtggtctc
aggtttgaaggacctcatggacagcctgtgggcagtcttagatttgataatcctcgaggt
cagcctgtaggaggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggtcctcatggtcagccaggtggtggtggtggtatcagatttgagggccctttg
ctacagcaaggagttggaatgaggtttgagggtccccatggtcagtctgtagctgggctg
agatttgaaggacataatcaactaggtgggaaccttaggtttgagggaccacatggtcaa
ccaggggttgggatcaggtttgaaggacctatagttcaacaaggaggtggaatgaggttt
gaaggtcctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcct
agatttgaaggttgtcactccttaaggtttgatggacagccaggtcagccatcacttttg
ccaagatttgatggattacatggccagccaggtcctagatttgaaagaactggtcagcca
ggtccacagagatttgatgggccacctggacagcaggttcaaccgagatttgatggtgta
cctcaaagatttgatgggccacaacaccagcaagcatcaagatttgatattcctcttggt
ttacaaggaactcgatttgacaatcatccttcacaaaggattgaatctttcaatcagtct
ggcccatataatgatccacctggcaatgcttttaatgtcccatctcaaggattacagttc
caaagacatgaacaaatatttgatacacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagaatttcccaaatcccattaacagagcttctggacactattttgatgaa
aagaatcttcagagttctcagtttggaaactttggcaatttacctacaccaatgtcagta
ggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtagcatttggt
caaggacaacagtttttaccagtacatccacagaatcctggggcttttattcaaaatcct
tcaggcggtcttcctaaggcatatcctgataatcatcttagtcaagtggatgtgaacgaa
ttgttttcaaaactgctaaaaacaggaattctcaaattgtcacagactgattcagctaca
gcacaggtaaacgaggctgttactcagcctccccctgaggaggaggaggatcagaatgaa
gatcaagatgttccagatcttactaatttcacaattgaagaattgaagcaacgttatgac
agtgttataaaccggctgtacactgggattcagtgttactcttgtggaatgaggtttaca
acatcccagacagatgtttatgcagatcatttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagtcactcatagacgctggtactacagtctaacagattgg
atagaatttgaagaaatagctgatctggaagaacgtgcaaaaagtcagttttttgaaaag
gttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggagttccaaagt
gtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
cagtactgggatgaagaggaggaagaatggcacttaaaaaatgctattagagtagacgga
aagatttaccatccatcatgttatgaagattatcaaaatacatcttcatttgattgcaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaagaaccctgtgaaagtcccaaagttaaggaagaacaaattgatgcccca
ccagcttgttcagaagaaagtgtagcaacacccactgaaattaaaacagaaaacgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
