Arvicanthis niloticus (African grass rat): 117707303
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Entry
117707303 CDS
T08817
Symbol
Pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117707303 (Pcdh18)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117707303 (Pcdh18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
TMEM154
BBS1
Syndecan
Cadherin_C_2
PAH
PepSY
Motif
Other DBs
NCBI-GeneID:
117707303
NCBI-ProteinID:
XP_034356644
EnsemblRapid:
ENSANLG00005000686
LinkDB
All DBs
Position
4:complement(33472357..33486501)
Genome browser
AA seq
1135 aa
AA seq
DB search
MHQMNTKMHFRFALALLMAFFSHNVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPN
PSAVRFRAMPRGNSPLLVVNENTGEISIGAKIDREQLCQKNLNCSIEFDVLTLPTEHLQL
FHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSAND
YFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTASDMGVPQRSGSSILKISISDSN
DNSPAFEQPSYTIQLLENSPIGTLLLDLNATDPDEGANGRIVYSFSSHVSPKIIETFKID
SERGHLTLFKPVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISINLMS
PGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEIICKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPSLSSVRHFTVQINDINDNPPRFQRSRYEFVISENNSP
GAYITTVTATDPDLGENGHVTYTILESFVLGSSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSQKQLSSNTTVVLTIIDENDNVPVVIGPAMHNNTAEISIPKGAESGFHV
TRIRVVDRDSGANAEFSCSIVAGNEGNIFIMDPRSCDIHTNVSLESISSTEWALSVIIQD
KGNPPLHTKVLLRCMVFDYAESVTSTAMTSVSHASLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQ
QHSHQGLDDDSQPAESGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMSSVFQRLLPASL
DTYSECSEVDRSNSLERRKGPAQGKTGGYPQGVAAWAASTHFQNPTSSSGTPLGTHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaaatgaatactaaaatgcactttagattcgcacttgcacttctgatggcgttt
ttcagccacaatgtcctgggtaagaatctgaaatacaggatttatgaggagcagagggtc
ggatcggtaattgctagactatcagaagatgtggctgatgttttactgaagctaccaaat
ccttctgccgttcgttttcgagccatgccacgggggaattctcctctcctggtcgtaaat
gagaataccggagaaatcagcataggggctaaaatcgaccgtgagcaactatgccaaaaa
aacttgaactgttcgatagagtttgatgtgctcactctgccgaccgagcatctgcagctg
ttccatattgaagtagacgtgctggacattaatgacaattccccccaattctcgagaccc
gtcattcccattgagatatcggagagcgcagcagttgggactcgcatccctctggatagt
gcgttcgacccagatgttggggaaaattccctccatacctactcgctctctgctaatgat
tattttaatatcgaagtgcggaccaggacggacggggccaagtacgctgaactcatagtg
gtgaaagagttggatcgtgagctgaaggctagctacgagcttcagctcacggcctccgac
atgggagtgcctcagaggtctggctcctctatcctgaaaataagcatttcggattccaac
gacaacagcccggcctttgagcagccctcttacacaatacaactcttagaaaactcccca
attggaaccttgctcctcgatctaaatgccaccgatccagatgagggcgccaatgggaga
attgtgtattctttcagcagtcatgtgtctcccaaaattatagagacttttaagatcgac
tcagaaagaggacacttgacccttttcaagccagtggattatgaaatcaccaagtcctat
gagatagacgttcaagcccaagatttgggtccaaattccatccctgctcattgcaaaatt
ataattaaggttgtggatgtcaatgacaataaacctgaaattagcataaatctcatgtcc
cctggaaaagaagaagtatcttatgtttttgaaggggatcccattgatacatttgttgct
atcgtcagggttcaagacaaggattctgggctgaatggggaaataatctgtaaacttcat
gggcatgggcattttaaacttcagaagacatatgaaaacaactacttaatcttgaccaat
gccactctggatagagaaaagagatctgagtatagtttgactgtgattgctgaggacaag
ggaacgcccagcctctcttccgtgagacattttactgttcaaatcaatgacataaatgac
aatccacctcgcttccagaggagccgatatgaatttgtcatctcagagaataattcgcca
ggggcatatatcaccacagttacagccacagatccggatcttggtgagaacggacatgtg
acatataccattttagagagttttgtcttgggaagttccattaccacctatgtaaccatt
gacccatctaatggcgccatctatgctctcaggatctttgatcatgaagaagtaagtcag
atcacttttgtggtggaagcaagggatggagggagtcagaagcaactctccagcaacacc
acagttgtgctgaccatcattgatgagaacgacaatgtccctgtggttatagggcctgca
atgcacaataatacagcagaaatctccatccccaaaggagctgaaagtggttttcatgtc
acaagaataagagtggtcgacagagactctggtgcaaatgctgaattcagctgctccata
gtagctggtaatgagggaaacatctttatcatggatccaaggtcatgtgacattcatacc
aatgtcagcctggaatccatttcctctaccgaatgggcactctcagttatcatccaggac
aagggcaatcctcctctgcacaccaaagtccttctgaggtgcatggtctttgactatgca
gaatctgtgacaagcacagccatgacctctgtcagccatgcatccttggatgtgtccatg
atcataattatttccttaggagcaatttgtgcagtgttgctggttattatggtactgttt
gcaacaaggtgtaacagagaaaagaaagacaccagatcctacaactgcagggtggcagag
tccacttaccagcatcatcccaaaaggccatccaggcagattcacaagggagacattaca
ctggtgcccaccatcaatggcactctgcccatcagatctcaccacagatcctccccatct
tcgtctccaaccttggaaaggggacaaatgggcagccgccagagtcacaacagtcaccag
tcactcaacagcttggtgaccatctcatcaaaccacgtgccagagaatttttcattagaa
ctcacccacgccactcctgctgttgagcaggtctcacagcttctctccatgcttcaccag
gggcaatatcagccacggccaagttttcgaggaaacaaatattccaggagctatagatat
gcccttcaagacatggataaatttagcttgaaagacagtggccgcggagatagtgaagca
ggagacagtgattatgatttggggcgagattctccaatagacaggctcctgggagaagga
ttcagtgacctctttctcactgatgggagaattccagcagcaatgaggctctgtacggag
gagtgcagagtcctgggccactctgaccagtgctggatgcccccactgccctctccatct
tcggattacagaagcaacatgttcatcccaggagaagaattcccagctcaacctcagcaa
cagcactctcatcagggccttgatgatgacagccagcccgcggaatctggggagaagaaa
aagagcttttccacctttgggaaggactcccctagcgacgaggactcgggggactctagc
acgtcatctctgctatcggaaatgagcagtgtgttccagcgccttctccccgcatctcta
gacacctattctgagtgcagtgaagtagaccggtccaactccctggaacgtcgaaagggt
ccagcgcaaggcaaaactgggggttacccacaaggggttgctgcctgggcagccagcaca
cattttcagaaccccaccagcagttccgggacccctcttgggactcactccagtgtgcag
ccttcttccaagtggctgccagctatggaggagatccctgaaaactacgaggaagatgat
tttgacaatgtgcttaaccatcttagcgacgggaaacacgaacttatggatgcaagcgag
ctggtggccgagatcaacaaactgcttcaagatgtccgccagagctag
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