Arvicanthis niloticus (African grass rat): 117707645
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Entry
117707645 CDS
T08817
Symbol
Pabpc4l
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117707645 (Pabpc4l)
09123 Folding, sorting and degradation
03018 RNA degradation
117707645 (Pabpc4l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117707645 (Pabpc4l)
03041 Spliceosome [BR:
anu03041
]
117707645 (Pabpc4l)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117707645 (Pabpc4l)
mRNA cycle factors
Stress granule specific factors
117707645 (Pabpc4l)
Spliceosome [BR:
anu03041
]
Complex C
Other components
Complex C specific factors
117707645 (Pabpc4l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_occluded
RRM_10
RRM_MARF1
Nup35_RRM_2
RRM_3
Dbl7
Taeniidae_ag
RB_A
Motif
Other DBs
NCBI-GeneID:
117707645
NCBI-ProteinID:
XP_034356972
LinkDB
All DBs
Position
4:complement(30370902..30372014)
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AA seq
370 aa
AA seq
DB search
MSVEAKYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLISHRSLGYAYVNFLQ
VNDAKKALETMNFDVIKGKSIRLMWSQRDACLRKSGVGNVFIKNLDKSIDNKTLYEHFSP
FGKIMSSKVMADEEGSKGYGFVHYQDQRAADRAIEEMNGKLLRESTLFVARFKSRKDREA
ELREKPTEFTNVYIKNFADDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSH
EAAKNAIEDMNGQDINGQTVFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNL
DDTIDDETLRKEFSAFGSICRVKVMKEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSK
PLNIALGQKH
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaagctaagtaccgtgcagcttccctgtatgtgggtgatctccacgaagat
gtcaccgaggacgtgctgttcaggaagttcaacacagtggggccggtgttgtccatacga
atctgcagggatctgatttcccatcgctcactaggctacgcctatgtcaattttcttcaa
gtgaatgatgccaaaaaggccctagaaaccatgaactttgatgtgatcaaaggtaaatcc
atccgtctcatgtggtctcaacgggatgcttgcttgaggaaatcgggagtcgggaatgtg
tttatcaagaatctagacaagtccattgataacaagaccttgtatgaacacttctcacct
tttggaaagatcatgtcctccaaggtgatggccgatgaagaaggctcaaagggctatggc
ttcgtgcactaccaggaccagagagcagcagaccgggccattgaggagatgaatgggaag
ctgctgagagagagcactttgttcgtggccaggttcaaaagccgtaaggatcgggaggct
gagctcagagagaaacccaccgaattcactaatgtttatatcaaaaactttgcggatgat
gtggacgatgagaagctgagggaagttttcagcaaatatggccaaactctgagtgttaag
gtaatgaaagatgccactgggaagtccaaaggctttggatttgtgagtttcgatagccat
gaggctgcgaaaaacgcaattgaagacatgaatggacaggacataaacgggcagacagtt
tttgtaggcagagcccagaagaaggtagaacgacaggctgagttaaaggaaatgtttgag
cagatgaagaaggaaagaatccgtgcacgtcaggcagctaagctctacattaagaacctg
gatgacaccattgatgatgaaacactgcgcaaggaattttctgcctttgggtctatctgc
cgagttaaagtgatgaaggaagcagggcagagcaaaggctttggtttgatctgcttcttc
tccccagaggcagctgctaaagcaatggctgagatgaatggccggatcctcggctccaag
cccctcaacattgctctgggtcagaagcactga
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