Arvicanthis niloticus (African grass rat): 117707753
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Entry
117707753 CDS
T08817
Symbol
Sox2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04390
Hippo signaling pathway
anu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
117707753 (Sox2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
117707753 (Sox2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117707753 (Sox2)
Transcription factors [BR:
anu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117707753 (Sox2)
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117707753
NCBI-ProteinID:
XP_034357167
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All DBs
Position
4:20002053..20004528
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AA seq
319 aa
AA seq
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MYNMMETELKPPGPQQASGGGGGGGNATAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQEQL
GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG
SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMAQHY
QSGPVPGTAINGTLPLSHM
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggagacggagctgaagccgccgggcccgcagcaagcttcggggggc
ggcggcggaggaggcaacgccacggcggcggccaccggcggcaaccagaagaacagcccg
gaccgcgtcaagaggcccatgaacgccttcatggtgtggtcccgggggcagcggcgtaag
atggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgcagag
tggaaacttttgtcggagaccgagaagcgaccgttcatcgacgaggccaagcggctgcgc
gctctgcacatgaaggagcacccggattataaataccggccgcggcggaaaaccaagacg
ctcatgaagaaggataagtacacgcttcccgggggcttgctggcccccggcgggaacagc
atggcgagcggggttggggtgggcgccggcctgggtgcgggcgtgaaccagcgcatggac
agctacgcgcacatgaacggctggagcaacggcagctacagcatgatgcaggagcagctg
ggctacccgcagcacccgggcctcaacgctcacggcgcggcacagatgcagccgatgcac
cgctacgacgtcagcgccctgcagtacaactccatgaccagctcgcagacctacatgaac
ggctcgcccacctacagcatgtcctactcgcagcagggcacccccggtatggcgctgggc
tccatgggctctgtggtcaagtccgaggccagctccagcccccccgtggttacctcttcc
tcccattccagggcgccctgccaggccggggacctccgggacatgatcagcatgtacctc
cccggcgccgaggtgccggagcccgctgcgcccagtagactgcacatggcccagcactac
cagagcggcccggtgcccggcacggccattaacggcacactgcccctgtcgcacatgtga
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