Arvicanthis niloticus (African grass rat): 117707792
Help
Entry
117707792 CDS
T08817
Symbol
Vcam1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04064
NF-kappa B signaling pathway
anu04514
Cell adhesion molecules
anu04668
TNF signaling pathway
anu04670
Leukocyte transendothelial migration
anu04933
AGE-RAGE signaling pathway in diabetic complications
anu05143
African trypanosomiasis
anu05144
Malaria
anu05417
Lipid and atherosclerosis
anu05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
117707792 (Vcam1)
04668 TNF signaling pathway
117707792 (Vcam1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117707792 (Vcam1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
117707792 (Vcam1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
117707792 (Vcam1)
05143 African trypanosomiasis
117707792 (Vcam1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
117707792 (Vcam1)
05418 Fluid shear stress and atherosclerosis
117707792 (Vcam1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
117707792 (Vcam1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117707792 (Vcam1)
04090 CD molecules [BR:
anu04090
]
117707792 (Vcam1)
04091 Lectins [BR:
anu04091
]
117707792 (Vcam1)
Cell adhesion molecules [BR:
anu04515
]
Immunoglobulin superfamily
VCAM
117707792 (Vcam1)
CD molecules [BR:
anu04090
]
Proteins
117707792 (Vcam1)
Lectins [BR:
anu04091
]
I-type lectins (Siglecs)
117707792 (Vcam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
Ig_4
Ig_5
Ig_6
ICAM_N
ICAM1_3_5_D2
C2-set_3
Adhes-Ig_like
Receptor_2B4
Motif
Other DBs
NCBI-GeneID:
117707792
NCBI-ProteinID:
XP_034357208
LinkDB
All DBs
Position
4:complement(94122618..94142585)
Genome browser
AA seq
739 aa
AA seq
DB search
MPTKMVAVFGASTALWILFAASQAFKIEISPEYRTIAQIGDSMSLTCSTTDCESPLFSWR
TQIDSPLNGKVKTEGAKSILTMDPVSFENEHSYLCTATCGSGKLERGIRVDIYSFPKDPE
IQFSGPLEVGKPVTVKCLAPDVYPVDRLEIDLFKGDDLLKNQEFLEEMSKKSLETKSLEV
TFTPVMEDIGKALICRAKLHIDPIDSIPKERETVKELQVYTSPTNTEISVHPSTRLHEGG
AVTMTCSSEGLPAPEIFWSKKLDNGVLQLLSGNATLTLIAMRMEDSGIYVCEGVNLIGRD
KTEVELVVQEKPFIVDISPGSQVSAQIGDSVVLTCAAVGCDSPSFSWRTESGSPLNGEVK
NEGAKSTLTLSSVSFENEHSYLCTATCLRRTLQKRIQVEVYSFPEDPEIEMSGPLVHGRP
VTVNCTVPNVYPFDHLEIELRKGETTLMNKQFLEETDIKSLETKSLEMTFIPTTEDTGKA
LVCLAKLHSGEMESEPKQRQSTQPLYVNVAPKETTILVSPSDVLEEGSPVNLTCSSDGFP
APQILWSRQLNNGELQPLSENATLTFTSAKMEDSGIYVCEGVNQAGISKTSVKLIVQDSQ
KDIQLTVFPSKSVKEGDTVIISCTCGNVPETWIILKKKAKTGDMVLKSVDGSYTILKAQL
QDAGIYECESKTEVGSQLRSLTLDVKGRENNKDDFPPELLALYCASSLVIPAIGMIIYFA
RKANMKGSYSLVEAQKSKV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctacgaagatggtcgcggtctttggagcttcaacggcactttggatactgtttgca
gcctctcaagcttttaaaatcgagatctcccctgaatacagaacgatcgctcagattgga
gactccatgtccctgacttgcagcaccacagactgtgagtcaccattgttctcgtggaga
acccagatagacagcccactaaacgggaaagtgaagacagagggggccaagtccattctg
accatggatcctgtcagttttgagaatgaacactcttacctgtgcacagcaacatgtggc
tctgggaagctggaacgaggaatccgagtggacatctactcgttccctaaggatccagag
attcaattcagtggccctctggaggttggaaagcccgtcacagtcaagtgtttggctcca
gacgtttacccggttgacaggctggagatagatctgttcaagggtgatgatctcttgaag
aatcaggagtttctagaagagatgtcaaagaagtctctggaaaccaagagtttggaagta
acctttactcctgtcatggaggatattggaaaagctcttatctgccgagctaaattgcac
attgacccaattgattctatacccaaagaaagggagactgtcaaagaactacaagtgtac
acctctcccacgaatacagagatctctgtgcacccctccacaaggcttcacgaaggaggt
gccgtcacgatgacctgttccagcgagggtctaccagctcctgagattttctggagcaag
aaattagataatggagttctccagctcctctcaggaaatgccactctcaccttaattgct
atgaggatggaagattctggaatctatgtgtgtgaaggagttaatctgattggaagagac
aaaacagaggtggaattagttgttcaagaaaaaccatttattgttgacatctcccccgga
tctcaggtgtccgcacagattggggattcagttgttctgacatgtgctgctgttggctgt
gactccccctctttttcttggagaactgagtcaggcagtcccctcaatggagaggtgaag
aatgagggggccaaatctacactgacgttgagctctgtgagttttgagaatgaacactct
tacctgtgcactgcgacctgtctgcgaaggacactgcagaagagaatccaggtggaggtc
tactcattccctgaagacccagaaattgaaatgagtgggccacttgtacatgggagacct
gtcactgtcaactgcacagtccctaacgtgtacccctttgatcatctggagattgaatta
cggaagggggagaccacactgatgaataaacagtttttggaggaaacggacataaagtct
ctagagaccaaaagtttggaaatgaccttcatccccaccactgaagatactgggaaagct
cttgtttgcctcgctaagttacacagtggcgaaatggaatctgaacccaaacaaaggcag
agtacacagcctctttatgtcaatgttgcccccaaggaaaccaccatcttggtgagcccc
tctgatgtcctagaggagggcagtcctgtgaacctgacctgctcaagtgatggttttcca
gctccccaaatcctgtggagcagacagctaaataatggggaactgcagcctctttctgaa
aatgctacactcaccttcacgtctgcaaaaatggaagattctggcatttatgtgtgtgaa
ggggttaaccaggctggaattagcaaaacatcagttaaactgattgtccaagactctcag
aaagacatacagcttacagtctttccgtctaagagcgtcaaagaaggagacactgtcatc
atctcctgcacttgtggaaatgtgcctgaaacgtggataatcctgaagaagaaagcaaag
acaggagacatggtgttaaagtctgttgatggctcatacaccatcctcaaggcacagctg
caggatgccggcatctacgagtgtgaatctaaaactgaagttggctcacaattaagaagt
ttaacgcttgatgtaaaaggaagagaaaataacaaggatgattttccccccgaactcctt
gcactctactgtgcatcctccttggtaatacctgccatcgggatgatcatttactttgca
agaaaagccaacatgaaaggatcatacagtctggtggaggcacagaaatcaaaagtgtag
DBGET
integrated database retrieval system
