Arvicanthis niloticus (African grass rat): 117708142
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Entry
117708142 CDS
T08817
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
anu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117708142 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117708142 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117708142 (Sympk)
03019 Messenger RNA biogenesis [BR:
anu03019
]
117708142 (Sympk)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117708142 (Sympk)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117708142 (Sympk)
U7-dependent histone pre-mRNA processing factors
117708142 (Sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
INTS7_N
Motif
Other DBs
NCBI-GeneID:
117708142
NCBI-ProteinID:
XP_034357435
LinkDB
All DBs
Position
1:2483292..2513401
Genome browser
AA seq
1362 aa
AA seq
DB search
MALEGRKWRPPRWTPGEGGRLRTRHALGAGTGRGAGLHFPAALLVQRLRCVTAAGGRWRR
QRLWRGAAEGARGGRRPEPRENLTAVMASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSE
RVVDLLNQAALIANDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIG
FIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQ
EACWDMVSSMAGEIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQEHDISLD
RIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEV
IQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAE
ITRNMPSSKDSRKRPRDDTDSTLKKMKLEPNLGEDDEDKDLEPGPSGTAKASAQISGQSD
TDITAEFLQPLLTPDNVANLVLISMVYLPETMPASFQAIYTPVESAGTEAQIKHLARLMA
TQMTAAGLGPGVEQTKQCKEEPKEEKVVKPESVLIKRRLSVQGQAISVVGSQSTVSPLEE
EAPQTKRRPEPIIPVTQPRLAGAGGRKKIFRLGDVLKPLTDAQVEAMKLGAVKRILRAEK
AVACSGAAQVRIKILASLVTQFDSGFKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAG
PSGTLDKYEDCLICLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRAYL
GMSTLGDLIFKRPSRQFQYLHVLLDLSSHEKDRVRSQALLFIKRMYEKEQLREYVEKFAL
NYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTE
AIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELV
KRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGN
SALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPL
PMLLMRTVIQSLTMYPRLGGFVMNILARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVIL
QLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEASGKQEPEVKEAPSG
PLEEDDLEPLALALAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKQKPTGVGAPASSVS
STPSVGPAARAGPTPAEEVMEYREDGPECETPAIFISMDDDSGLAETTLLDSSLEGPLPK
EAAAVGPSSKDERSPQNLSHAVEEALKTSSPEAREPESKGNS
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaggccggaaatggcggccgccccggtggacgcccggggagggcgggcgg
ctgcggacgcggcacgccttaggggcggggacgggccgcggtgccggactccatttcccg
gcggccctactagtgcagcgcctgcgctgtgtcacggcggcgggcggaagatggcggcgg
cagcgtctgtggagaggcgctgctgagggggcgcgagggggacggaggccggagccgcgg
gagaacctgacagcagtcatggcaagcggcagcggggacagtgtcacccgccggagtgtg
gcatcacagtttttcacacaagaagaggggccaggcattgatggcatgaccacttctgag
agggtggtagatctcctgaaccaggctgcgttgatcgccaatgactcaaagatcacagta
ctcaaacaggtccaagagctgatcatcaacaaggaccccaccctgcttgacaacttcctg
gatgagatcatcgctttccaagcagacaagtccattgaagtgcgcaagtttgtcattggc
ttcatcgaggaggcatgcaagcgggacattgagctgctgctgaaactgatcgccaacctc
aacatgctattgcgggatgaaaacgtgaacgtggtgaagaaggccatcctcactatgacc
cagctctacaaggtggccctgcagtggatggtgaagtctcgggtcatcagtgatctgcag
gaggcctgctgggacatggtgtcctccatggctggggagatcatcctgctcttggattct
gacaacgatggcatccgtacacatgccatcaagtttgtggaaggcctcattgtcaccctg
tcacctcgcatggctgactcagaggtcccacgacgccaggagcatgacatcagtctggac
cgcatccctcgtgatcacccctacatccagtacaatgtcctatgggaagaaggcaaggca
gctctggagcagctgctcaagttcatggtacatcctgccatctcctccatcaacctgacc
acagcactgggctcccttgccaacatcgcccgtcagagacccatgttcatgtccgaggtg
atccaggcctatgagactctgcatgccaacctgcccccaacactggccaagtcccaggtg
agcagtgtgcgtaagaacctcaagctgcacttgttgagtgtgctcaagcaccctgcctcc
ttggagttccaggcccagatcaccaccctgctggtggacctgggcacaccccaggccgag
atcacccgtaatatgcctagcagcaaggactcccgcaagcggccccgggatgatacagat
tccacgctcaagaagatgaagctggagcccaatttgggagaagatgatgaggacaaagac
ttggagcctggcccatcagggacggcaaaggcctcagcccagatctcaggccagtcagac
acagacatcactgctgagttcttgcagcctctgctgacgcctgacaatgtggccaatctg
gtcctcatcagcatggtgtacctgcctgagaccatgcctgcctccttccaagccatctac
acccccgtggagtcagcaggcaccgaagcccagatcaagcacctggctcggctcatggcc
acacagatgacagctgcaggactgggtcctggtgtggaacagacgaaacagtgcaaggag
gagcccaaggaggagaaggtggtaaagccagagagcgtcctgatcaagcggcgcctgtca
gtgcagggccaggccatctctgtggtgggctctcaaagcaccgtatcccccttggaggag
gaggcaccccagactaagaggaggccagaacccatcatccctgtcacacagccacggctg
gcaggtgcaggtggacgcaagaagatcttccgtctaggcgatgtgctaaagcccctgaca
gatgcccaggtggaagccatgaagctgggagccgtgaagcggatcctgagggccgagaag
gctgtagcttgcagtggggcagcccaggtgcgcatcaagatcctggccagcctcgtgaca
cagtttgactccggattcaaggcagaggtgctgtcctttatcctggaagatgtccgggcc
cgtctggacctggcttttgcctggctctaccaggaatataatgcctacctggcagcaggg
ccctctggcacgctggataagtatgaagactgtctcatctgcctgctctctggactgcaa
gagaaaccggaccagaaagatgggatctttaccaaggtggttttggaggccccgctaatc
actgagagtgccttggaggtgatccggaagtactgtgaggatgagagtcgagcctacctg
ggcatgtcgacacttggagacctgatcttcaagcgcccttctcgccagttccagtatctg
catgttctcctcgacctcagctctcatgagaaggacagggtgcgctcccaagccctgctc
ttcattaagcgcatgtatgagaaggagcagcttcgagagtatgtggagaaatttgccctc
aactacctgcagctcctggtccaccccaacccaccttcggtgctgtttggagccgacaag
gatacagaggtagctgcgccctggacagaggaaacggtgaagcagtgtttgtatctgtat
ctggctctcctgcctcagaaccacaagctgatccatgagctggcagccgtgtacactgag
gctatcgctgacatcaagcggacagtgctgagggtcattgagcagccgattcgagggatg
ggcatgaactctccagagctgctgctgctggtggaaaactgtcccaagggggcagagacg
ctggtcacccgctgcctgcacagcctcactgacaaagtgccgccatccccagaactggtg
aagcgggtccgagacctgtaccacaagcggctgcctgatgtgcgcttcctcatccctgtg
ctcaatgggttggagaagaaagaggtgatccaggccctgcccaagctcatcaaactcaac
cccattgtggtgaaggaggtcttcaaccgcctgctaggcacccagcacggtgagggaaac
tcggccctgtcccccctgaatccaggagagctgctgattgcattgcacaatattgactct
gtgaagtgtgacatgaagtccatcatcaaagccaccaacctgtgttttgcggagcggaat
gtgtacacgtcggaagtgctggctgtggtgatgcagcagctgatggagcaaagccctctg
cccatgctgctcatgcggaccgtcatccagtccctcaccatgtacccccgcctggggggc
ttcgtcatgaacatcctggcccgactcatcatgaagcaggtatggaagtaccccaaggtg
tgggagggcttcatcaagtgctgccagcgcaccaagccccagagtttccaggtcatcctg
cagctacctccgcagcagcttggtgcagtctttgacaagtgccctgagctccgggagcca
ctgttggcccatgtgcgctccttcaccccccaccagcaagcacacatccccaactccatc
atgaccatcctggaggccagtggcaagcaggagcccgaagtcaaggaagcaccctcaggg
cccctggaagaggatgacctggagcccttggctctcgctttggcccccgcccctgcccca
cggccccctcaggacctcatcggcctgcggttggctcaggagaaggccctgaagcggcag
ctggaggaagaacagaagcagaagcccacaggtgttggagcgcccgcttcctctgtgtcc
tcaacgccctcagtggggccagcagcccgagctggtcccaccccggctgaggaggtcatg
gaataccgggaggatggtcccgaatgcgagaccccggccatcttcatcagcatggatgac
gactcagggctggctgaaaccacactcctggactctagtctcgaggggcccctgcctaag
gaggcagcagcagtcgggccgagctccaaggatgagcggagcccccagaacctcagccat
gctgtggaagaagccttgaagacctccagcccagaggccagggaacccgagagcaagggg
aacagctga
DBGET
integrated database retrieval system
