Arvicanthis niloticus (African grass rat): 117708264
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Entry
117708264 CDS
T08817
Symbol
Vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04137
Mitophagy - animal
anu04141
Protein processing in endoplasmic reticulum
anu05014
Amyotrophic lateral sclerosis
anu05022
Pathways of neurodegeneration - multiple diseases
anu05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117708264 (Vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117708264 (Vcp)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
117708264 (Vcp)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117708264 (Vcp)
05022 Pathways of neurodegeneration - multiple diseases
117708264 (Vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117708264 (Vcp)
03009 Ribosome biogenesis [BR:
anu03009
]
117708264 (Vcp)
04131 Membrane trafficking [BR:
anu04131
]
117708264 (Vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117708264 (Vcp)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117708264 (Vcp)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117708264 (Vcp)
Membrane trafficking [BR:
anu04131
]
SNARE
SNARE associated proteins
Others
117708264 (Vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117708264 (Vcp)
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117708264 (Vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
117708264
NCBI-ProteinID:
XP_034357627
LinkDB
All DBs
Position
5:101314291..101341092
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGNVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggagccgattcaaagggtgatgatttatcaacagctattctcaaacagaag
aaccgtcccaatcgattaattgttgatgaagccatcaatgaagataacagtgtggtgtcc
ttgtcccagcccaagatggatgaattgcagttgttccgaggtgacacagtgttgctaaaa
ggaaagaagagacgggaagctgtatgcattgttctttctgatgacacatgttctgatgag
aagattcgaatgaatagagttgttcggaataacctccgagttcgcctaggagatgtcatc
agcatccagccatgccctgatgtaaagtatggcaaacgtatccacgtgctacccatcgat
gacacagtggaaggcatcactggcaatctctttgaggtataccttaagccgtacttcctg
gaagcctatcggcccatccgtaaaggagatatttttcttgtccggggtgggatgcgtgct
gtggagttcaaagtagtagagacagatcccagcccttactgtattgttgctccagacaca
gtgatccactgtgagggagagccaatcaagcgagaggatgaggaggagtccttgaatgaa
gtaggctatgatgacatcggtggttgcaggaagcagctagctcagataaaggagatggtg
gagctgccactgagacatcctgcactctttaaggcaattggtgtgaagcctcctcgggga
atcttgctatatggacctcctgggacagggaagaccctgattgcccgagctgtggcaaat
gaaactggagccttcttctttctgatcaatggtcctgaaatcatgagcaaattggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaagctgaaaagaatgctcctgctatc
atcttcattgatgagcttgatgccattgcgcccaaaagagagaaaactcacggggaagtg
gagcgtcgcatcgtgtctcagttgttgaccctcatggatggcctaaagcagagagcacat
gtgatagttatggcagcaaccaatagacccaacagcattgacccagccctacgtcgattt
ggtcgctttgacagagaggtagatattggaatcccggatgctacaggacgtttggaaatt
cttcagatccataccaagaacatgaaactggcagatgatgtggacttggaacaggtagcc
aatgagactcatggtcatgtgggtgctgatttggcagccctgtgttcagaggctgctctg
caggccatccggaaaaaaatggatctcattgacctagaagatgagaccattgacgctgag
gtcatgaattccctggcagttactatggatgacttccggtgggccttgagtcagagcaac
ccatcagcacttcgggaaactgtggtagaggtgccacaagtaacctgggaagacattgga
ggcctggaagatgtcaaacgtgaacttcaggagttggttcagtatcctgtggagcatcca
gacaaattcctcaaatttggcatgactccttccaaaggtgttcttttctatggacctcct
ggctgtgggaaaaccttgctggccaaagccattgctaatgaatgccaggcaaacttcatc
tccatcaagggtcctgagctgcttaccatgtggtttggggaatctgaggccaatgtcagg
gaaatttttgacaaggcacgacaagctgccccctgtgtactcttctttgatgagttagat
tcaattgccaaggctcgtggtggtaatattggagatggtggtggagctgctgaccgagtc
atcaatcagatcctgacagaaatggatggcatgtccacaaaaaagaatgtgtttatcatt
ggagctaccaaccggcctgacatcattgatcctgctatcctaagacctggccgtcttgat
cagctcatttacatcccacttcctgatgagaagtcccgtgttgccatcctaaaagccaat
ctgcgaaagtccccagttgccaaggatgtggatttggagttcctggctaagatgactaat
ggcttttctggagctgatctgacagaaatttgccaacgtgcttgtaaactggccattcgt
gaatctattgagagtgagattaggcgagaacgagagaggcagacaaatccatcagcaatg
gaggtagaagaggatgatccagtgcctgagatccgcagagatcactttgaggaagccatg
cgttttgcccgacgttctgtcagtgataatgacattcggaagtatgaaatgtttgcccag
acactgcagcagagtcgaggttttggcagcttcagattcccttcagggaaccagggtgga
gctggccccagccagggcagtggaggtggcacaggtggcaatgtgtacacagaagacaat
gatgatgacctgtatggctaa
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