Arvicanthis niloticus (African grass rat): 117708440
Help
Entry
117708440 CDS
T08817
Symbol
Prdm2
Name
(RefSeq) PR domain zinc finger protein 2 isoform X1
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu00310
Lysine degradation
anu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
117708440 (Prdm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117708440 (Prdm2)
03036 Chromosome and associated proteins [BR:
anu03036
]
117708440 (Prdm2)
Enzymes [BR:
anu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
117708440 (Prdm2)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117708440 (Prdm2)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
117708440 (Prdm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2H2_ZNF462_1st
zf-C2HE
zf-C2H2_11
Zf-C2H2_ZNF451
PyrI_C
Motif
Other DBs
NCBI-GeneID:
117708440
NCBI-ProteinID:
XP_034357959
LinkDB
All DBs
Position
5:11685405..11787545
Genome browser
AA seq
1707 aa
AA seq
DB search
MHQNTESVAAIETLAEVPEHVLRGLPEEVRLLPSAVDKTRIGVWATKPILKGKKFGPFVG
DKKKRSQVRNNVYMWEVYYPHLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRA
IYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRRGKKKSQENKNK
GTRTQATQLKASELDSTFASMRGSAEGPKEEDERPLASAPEQPALLPEVVSQDAAPQVAI
PLPACEPQPKADGKQEVTDCEVNDMEEEEEEEEELEEEEEEEELGEDGEEEADMPNESSV
KEPEIRCEEKPEDLLEEPQSMSNETSGDSPDVIPPLHISRTREEASGDVLETFMFPCQHC
ERKFATKQGLERHMHIHISTINHAFKCKYCGKPFGTQINRRRHERRHETGLKRRPSMTLQ
PSEDPDDGKGENVTSKDESSPPQLGQDCLILNSEKTSQEILSSSFVEENGEVKELHPCKY
CKKVFGTHTNMRRHQRRVHERHLIPKGVRRKGGLLEEHPPAEQAPPSQNVYVPSTEPEEE
GETDDVYIMDISSNISENLNYYIDGKIQTNNSTSSCDVIEMEANSAHLYGIDCLLTPVTV
EITQNIKSTQVSVTDDLLKESPSSTNCESKKRRTASPPVLPKIKAETDCDSTAPSCSLSV
PLSISTTEVVSFHREKGVYLSSKLRQLLQTQDKLTPPAGVSAAEMPKLGPVCGSAPASML
PVTSSRFKRRTSSPPSSPQHSPALRDFGKPSDGKAAWTDTVLTSKKPKLESRSDSPVWSL
PGRDERETGSPPCFDEYKISKEWVASSTFSTVCNQQPLDLSSGVKQKSEGTGKTPVPWES
VLDLSVHKKPCDSEGKEFKENHLAQPAAKKKKPTTCMLQKVLLNEYNGVSLPTETTPEVT
RSPSPCKSPDTQPDPELDPDLSCSAPTAESPPEVVGPSSPPLQTASLSSGQLPPLLIPTE
PSSPPPCPPVLTVATPPPPLLPTVPLPNSSCDASPQQCPSPFSNATAQSPLPILSPTVSP
SPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSFSSSSCSSTSPSPPPLSAVSSVVSSGD
NLEASLPAITFKQEESESEGLKPKEEAPPSGGQSVIQETFSKNFVCNVCESPFLSIKDLT
KHLSVHAEEWPFKCEFCVQLFKGKTDLSEHRFLLHGVGNIFMCSVCKKEFAFLCNLQQHQ
RDLHPDEVCTHHEFESGTLRPQNFTDPTKAHVEHMPSLPEEPLETSREEELNDSSEELYT
TIKIMASGVKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTATNFTTHNIPQTFTT
AIRCTKCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQPKNGVVVLDNSGK
NAFRRMGQPKRLSFNVELNKVSPNKLKLSALKKKNQLVQKAILQKNRSAKQKADLRDTSE
ASSHICPYCDREFTYIGSLNKHAAFSCPKKPLSPSKRKVSHSSKKGGHASSASSDRNSSS
NPRRRTADTEIKMQSMQAPLGKTRARSTGPAQASLPSSSFRSRQNVKFAASVKSKKASSS
SLRNSSPIRMAKITHVEGKKSKAVAKSHSAQLSSKSSRSLHARVQKSKAVIQSKAALASK
KRTDRCIVKSRERSGGPITRSLQLAAAADLSESRREDSSARHELKDLSYSLRLASRCASS
TAPYITRQCRKVKAAAATQFQGPFFKE
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagaacaccgagtctgtggcagccattgagactttggctgaggtacctgaacat
gtgcttcgaggacttccagaggaagtaagacttttaccatctgcagttgacaagactcgg
attggtgtctgggccactaaaccaattttaaaagggaaaaagtttgggccatttgttggt
gataagaagaagagatcccaggttaggaataatgtctacatgtgggaggtgtactaccca
catttggggtggatgtgcattgatgcaaccgatccggagaagggcaactggctgcgctat
gtaaactgggcttgctcaggagaagagcagaatttatttccactggaaatcaacagagcc
atttactataaaaccttaaagccaatcgcgcctggcgaggagctcctggtctggtacaat
ggggaagacaaccccgagatagcagctgcgattgaggaagagcgagccagcgcccggagc
aagcggagctccccgaagagccgcagagggaagaagaaatcacaagagaataaaaacaaa
ggcaccagaacccaggctacacagctgaaggcaagtgagctggactccacctttgcaagc
atgaggggctctgcagaaggtccaaaagaagaggatgagaggcctttggcttctgcacct
gagcagccagcccttctgccagaggtggtaagccaggatgcagctccacaggtggccatt
cctctccctgcctgtgagccacagccaaaggcagatgggaaacaagaagtcacagattgt
gaggtcaatgatatggaagaagaggaggaagaggaggaagagctggaggaggaagaggag
gaagaggagttgggagaagatggggaggaagaagcagacatgcctaacgaaagctctgtg
aaagagccagaaatacggtgtgaagaaaagccagaagatttattagaagagccacagagc
atgtcaaatgaaacttctggagactctccagatgtgatccctcctctccacatttccaga
actagagaggaggccagcggtgatgttctggaaacatttatgtttccatgtcagcattgt
gaaagaaaatttgcaacgaagcaggggctagaacgtcacatgcacatccacatttccaca
atcaatcatgctttcaagtgcaaatactgtgggaaaccgtttggcacacagattaacagg
aggcggcatgaacggcggcacgagacggggttgaagagaagacccagcatgacattacag
ccctcagaggacccagatgatggcaagggggaaaatgttacttctaaagatgagtcaagt
ccacctcaacttggacaagactgtttgatattgaactcagagaaaacctcacaggaaata
ctgagttcatcttttgtggaagagaatggcgaagttaaagaacttcatccgtgcaaatac
tgcaaaaaagtatttggaactcacaccaatatgagacgacatcagcgtagagttcacgaa
cgccacctgattcccaaaggtgtccggcgaaaaggaggactcctagaagagcatccacca
gcagagcaggccccaccctcccagaatgtctatgtaccaagcacagagccagaggaggaa
ggggaaacggatgatgtgtacatcatggacatttctagtaacatctccgaaaatctcaat
tactatattgatggtaagattcagaccaacaacagcacgagtagttgtgatgtgattgag
atggaggctaattctgcacacttgtacggcatagattgtctgctcactccagtaactgtg
gagattactcagaatataaagagcactcaggtctctgtgacagatgatcttcttaaagag
tctcccagcagcacaaattgtgagtcgaagaagcggaggactgccagtccacctgtgctc
cccaagattaaagcagagacagattgtgattccacggcaccctcgtgttccttaagtgtg
cctctgagcatatcaacaacagaggtggtgtctttccatagagagaagggtgtctatttg
tcttcaaagctcaggcagcttcttcagacccaggacaagctgactcctcctgcaggggtt
tcagcagctgagatgcctaagttaggtcctgtgtgtggatctgctcctgcatccatgtta
cctgtgacttccagtaggtttaagagacgcaccagctctccacccagttctccacagcac
agccctgcccttcgagactttgggaaaccgagtgatggaaaagcagcatggacagacaca
gttttgacttccaagaaacccaagttagaaagtcgtagtgactcaccagtgtggagtttg
cctgggagagatgagagagaaactggaagccctccttgctttgacgaatacaaaatatca
aaagaatgggtggccagttctactttcagcaccgtgtgcaaccaacagccattggattta
tccagcggggtcaaacagaagtcagagggcacaggcaagactccagttccatgggaatct
gtattggatctcagtgtgcataaaaagccttgtgattctgaaggcaaggaattcaaagag
aatcatttggcacagccagctgcaaagaagaaaaaaccaaccacctgcatgctacaaaag
gttcttctcaatgagtataatggtgttagcttacccacagaaaccacaccagaggtgacc
aggagcccaagtccttgtaaatccccagatacacagccagatcctgagcttgatcctgac
ttgagttgctcagcccccactgctgagtcaccacctgaagttgttggcccttcatcaccc
cctctccagacagcttccttgtcttctggtcagctgcctcctcttttgatccccacagag
ccttcttctcctcccccctgccctcctgtgttaactgttgccactccaccacctcccctc
cttccaaccgtccctctccccaattcctcttgtgatgcctctcctcagcaatgcccctct
ccattctcaaatgccactgctcagtctcctctgccaattctctccccaacagtgtctccc
tctccctctcccattcctcctgtagagccactcatgtctgctgcttcccctggtcctcca
acactttcttcctcttcctcctcctcttcctcctcttctttctcttcctcttcatgttcc
tccacctccccctcaccaccccctctctcagcagtgtcatctgtggtttcctctggggac
aacctggaagcctctcttcctgcaataactttcaaacaggaggagtcagagagtgaaggt
ctgaaacccaaggaagaggccccaccttcaggtggacagagtgttatccaagaaacattc
agcaaaaactttgtttgcaatgtctgtgaatcacctttcctttccattaaagacctaacc
aaacatttatctgttcatgctgaagaatggcccttcaaatgtgagttttgtgtgcagctt
tttaagggtaagactgatctgtcagagcatcgatttctgcttcatggagtcggaaatatc
tttatgtgttctgtatgtaagaaagaatttgccttcttatgcaatttacagcagcaccag
cgtgatctccacccagatgaggtatgcacacatcacgagtttgaaagtgggaccctgagg
ccccagaacttcacagaccccacgaaggcccatgtggagcatatgccgagtttgccagaa
gagcctttggaaacttctagagaggaggagttaaatgattcctctgaagagctttacaca
accatcaaaataatggcttctggggtaaagacgaaagatccagatgttcgacttggtctc
aaccagcattacccgagctttaaaccacctccatttcagtaccaccatcgaaaccctatg
gggattggggtgacagccacaaacttcaccacccacaatattccacagactttcactact
gccattcgctgcacaaagtgtgggaagggtgttgataatatgcccgagctacataagcat
atcttggcatgtgcatctgcgagtgacaagaagaggtacactcctaagaaaaacccagtg
cccctgaaacaaactgtgcagcccaaaaatggagtggtagttttagacaactctgggaaa
aatgcctttagacgaatggggcagcccaagagactgagcttcaatgttgaactcaacaaa
gtgtctccaaataagctcaagctaagtgcattgaagaaaaaaaatcagctggtacagaaa
gcaatccttcagaagaacagatctgcgaagcagaaggcagacctgagggacacttcggag
gcatcctcgcacatctgcccttactgtgacagggagttcacatacatcggcagcctgaat
aagcatgccgctttcagctgtcctaaaaaacccctttctccttccaaaagaaaagtttcc
cattcatctaagaaaggtggccacgcatcgtctgctagcagtgacagaaacagtagcagc
aatccccggaggcggactgcagataccgagatcaagatgcagagcatgcaggcacccttg
ggcaagaccagagctcggagtacaggccctgcccaggcctcactgccctcctcatccttc
agatccagacagaatgtcaaatttgcagcttcagtcaaatccaaaaaagcaagttcttca
tccttgaggaattctagtcccataagaatggccaaaattactcatgttgagggcaaaaaa
tccaaagctgttgccaagagtcactctgctcagctctcaagcaagtcgtcccgaagcctg
cacgcaagagtgcagaagagcaaagctgtcatacaaagcaaggctgccctggccagtaag
aaaagaacagaccggtgcatagtaaaatctagagagcggagcgggggcccaatcacccga
agccttcagctggcagctgctgcagacctgagtgaaagcaggagagaggacagcagtgcc
aggcatgagctgaaggacttgagttacagcctccgcctggcatcccgatgcgcctcatca
acagccccttatatcaccagacaatgcagaaaggtcaaggctgcagcagcaactcagttc
cagggacccttcttcaaagagtag
DBGET
integrated database retrieval system
