Arvicanthis niloticus (African grass rat): 117708490
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Entry
117708490 CDS
T08817
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu02010
ABC transporters
anu04148
Efferocytosis
anu04975
Fat digestion and absorption
anu04979
Cholesterol metabolism
anu05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117708490 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117708490 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
117708490 (Abca1)
04979 Cholesterol metabolism
117708490 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
117708490 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
anu02000
]
117708490 (Abca1)
Transporters [BR:
anu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117708490 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
117708490
NCBI-ProteinID:
XP_034358068
LinkDB
All DBs
Position
5:91673395..91792694
Genome browser
AA seq
2261 aa
AA seq
DB search
MAFWTQLRLLLWKNLTFRRRQTCQLILEVVWPLVIFLILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDAQRLLLYSQKDT
SVKDMHKVLRTLRQINHPNSNLKLQDFLVDNETFSGFLQHNLSLPRPTVDSLLRADVGLQ
KVFLQGYQLHLASLCNGSKLEEIIQLGDAEVSALCGLPREKLDAAERVLRSNMDILKPVV
TRLNSTSPLLTQHLTDATKTLLDSLGGLAQELFSTKSWSDMRQEVMFLNNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEEDMDTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PQIWTFMENSQEMDLVRTLLDSRGNDQFWKQKLNGLDWTAQDIMAFLAKNPEDVQSPNGS
VYTWREAFNETNQAIQMISRFMECVNLNKLEPIPTEVMLISKSMELLDERKFWAGIVFTG
VIPDSMELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDLFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSFIPLLLSAILLVIILKFGNLLPYSDPSVVFV
FLLLFATVTILQCFLISTLFSRTNLSAACGGIIYFTMYLPYVLCVAWQDYVGFSIKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNFFESPVEEDGFNLTTAVSMMLFDSFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEEIDEKTYAGSRQKGVSEICMEEEPTHLKLGVS
IQNLVKVYRDGKKVAVDGLALNFYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSELSSIRRNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSHLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLS
SCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEDSGVDAE
TSDGTLLARRNRRAFGDKQSCLHPFTEDDAIDPNDSDVDPESRETDLLSGMDGKGSYQLK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPALFVCVALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDTGTQELLNALTKDPGFGTRCMEGNPIPDTPCLDGEEDWTISP
VPQTIVDLLQNGNWTMKNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQKTADILQNL
TGRNISDYLVKTYVQIIAKSLRNKVRVNEFRYGGFSLGVSNSQSLPPSQEVNDAIKKMKK
LLKLTKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENLSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVVIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTSNKLNDIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFISPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIKPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKQKPAVDRICIGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTKGDALLNKNSILTD
IHEVHQNMGYCPQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YACNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIIVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKQLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggctttttggacacagttaaggctgctgctgtggaagaatctgacgtttcgaagaaga
caaacatgtcagctgatactggaagtggtctggcctctcgttatcttcctgatcctgatc
gctgttcgcctgaactacccaccctacgaacaacacgagtgccactttccaaataaagcc
atgccgtctgcaggaacccttccctgggtacaggggattatctgtaatgccaataaccct
tgcttccgttatccaactccaggcgaggctcccggtgttgttggaaactttaacaagtcc
attgtgtctcgcctgttctctgacgctcagaggcttcttttgtacagccaaaaagacacc
agcgttaaggacatgcacaaggtcctgagaacattacgacagatcaatcatcccaattca
aatttgaagctccaggatttcctggtggacaatgaaacgttctctggattcctacagcac
aatttgtcccttccaaggcctactgtggacagcctgctgcgggcggatgtcggtctccag
aaggtatttttgcaaggctaccagttgcatttggccagtctgtgtaatggatcaaagtta
gaagaaatcattcagcttggtgatgcggaagtttctgccctttgtggtctacctagggag
aagctggatgcagctgagcgagtgctgcgctctaacatggacatcctgaagccagtcgtg
acaagactaaactccacatctcctctcctgacccagcatctgactgacgccaccaaaacg
ttgcttgacagcttaggggggctggcccaagagctgttcagcacaaagagctggagtgac
atgcggcaggaggtgatgtttctgaacaacgtgaacagctccagctcctccacccagata
taccaggctgtgtcccgcatcgtctgtggtcacccagagggtgggggcctgaagatcaag
tccctcaactggtatgaggataacaactacaaagccctcttcggagggaatagcaccgag
gaagacatggacaccttctatgacaattctacaactccttactgcaatgatttgatgaag
aacttggagtcgagtcctctttctcgaattatttggaaggcactcaaaccactgcttgtt
ggaaagattctctatacacctgacacaccagctacaaggcaggtcatggctgaggtgaac
aagacctttcaggagctggctgtgttccatgacctggaaggcatgtgggaagaactcagc
ccccaaatttggaccttcatggagaacagccaagagatggaccttgtccggacactgtta
gacagcagaggcaatgaccagttttggaaacagaagttgaatggattagattggactgcc
caagacatcatggcatttctggccaagaatccagaggacgttcagtccccaaatggctct
gtgtatacatggagagaagctttcaatgagaccaaccaggcaatccagatgatatctcga
ttcatggagtgtgtcaacctgaacaagctggagcccatcccgacggaggtcatgctcatc
agcaagtccatggagctgctggatgagaggaagttctgggctggcatcgtgttcacggga
gtcattcctgacagtatggagctgccccatcatgtaaagtacaagatccggatggacatt
gacaacgttgaaagaactaataagatcaaggatgggtactgggaccctggtccccgggct
gacccctttgaagatatgcgctatgtctggggtggcttcgcctacttgcaggatgtggta
gagcaggcaatcatcagagtgctgacaggaactgagaagaaaacgggtgtctatgtgcaa
cagatgccctacccctgttatgttgatgacctttttctgcgtgtcatgagccggtcaatg
cccctcttcatgactctggcctggatctactctgtggctgtgatcatcaagggtattgtc
tatgagaaggaggctcggttgaaggagaccatgcggatcatgggcctggacaatggcatc
ctctggtttagctggttcattagcagcttcatccctctgcttttgagcgctattctgctg
gtgatcatcttgaagttcggaaacctgctgccctatagtgaccccagcgtggtgttcgtc
ttccttttgttgtttgccacggtgaccatcctacagtgcttcctcattagcacgctcttc
tcccggaccaacctgtcagcagcctgtgggggcatcatctacttcacgatgtacctgccc
tacgtgctgtgtgtagcctggcaggactatgtgggcttctccatcaagatctttgctagc
ctgctgtctcctgtggcttttggatttggctgtgagtatttcgccctttttgaggagcaa
ggcatcggagtccaatgggataatttctttgagagcccggtagaggaggatggcttcaat
ctcaccactgcagtgtctatgatgctctttgattcctttctctatggtgtgatgacatgg
tacatcgaggcagtctttccagggcagtacggaattcccaggccctggtattttccttgt
accaagtcctactggtttggtgaggaaattgatgagaagacctacgctggttcccgccag
aagggggtgtcagaaatctgcatggaagaggaacccactcatctgaagctgggggtgtcc
attcagaacctggtgaaggtttaccgagatggcaaaaaggttgctgtggatggcttggca
ctaaatttctatgaggaccagatcacctccttcctgggccacaatggagcaggaaagacc
accaccatgtcaatactgactgggctgtttcccccaacttctggcactgcctacatcctg
gggaaggacattcgctctgagttgagctccattcggcgtaacctgggagtctgtccgcag
cataacgtgctgtttgacatgctgactgtcgaggagcacatctggttctatgcccgccta
aaggggctctcagagaagcatgtgaaagcagagatggagcagatggccctggatgttggc
ttaccccccagtaagctgaaaagcaaaacaagtcatctctcaggtgggatgcagagaaag
ctgtctgtggccttggccttcgtgggtggatccaaggttgtcattctagatgagcccaca
gcaggtgtggacccgtactctcgcaggggaatatgggagcttctgctgaaataccggcaa
ggccgcaccattattttgtctacacatcacatggatgaggcagacatcctaggggacaga
attgccatcatttcccatgggaagctgtgttgtgtgggctcctccctgtttttgaaaaac
cagttgggaacaggttactacctgaccctggtcaagaaagatgtggactcgtccctcagt
tcctgcagaaacagtagcagcactgtgtcatgtctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tctgctatctccaacctcatcaggaagcacgtgtctgaagctcggctggtggaggacatc
gggcacgaactgacctacgtgctgccgtatgaagccgctaaggagggagcttttgtggaa
ctcttccatgagattgatgaccggctctcagacttgggcatctccagttatggcatctca
gagactaccctagaagaaatatttctcaaagtggctgaagacagtggcgtggatgctgag
acctcagatggtactttgctagcaagacgaaacagacgggcctttggggacaagcagagc
tgtctgcacccatttaccgaagacgatgctattgatccgaatgactctgacgtagaccca
gaatccagggagacagacctgctcagtgggatggatggcaaaggctcctaccagctgaag
ggctggaaactgacccagcagcagtttgtggcccttttgtggaaaaggctgttgattgcc
cgacggagcaggaaagggttctttgctcagattgtcctgccagctctctttgtttgtgtt
gccctggtgttcagcctgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtataatgaacagtatacatttgtcagtaatgatgccccagaggacactggc
acccaggaactcctgaatgctttaaccaaagatccaggcttcgggacccgatgtatggaa
ggaaatccaatcccagacaccccttgcttggatggggaggaagactggaccatcagccca
gttccccagaccatcgtggacctcctccaaaatgggaactggacaatgaagaacccctca
cctgcgtgccagtgtagcagtgacaaaatcaagaagatgctgcctgtgtgtcccccaggg
gcaggaggactgccacctcctcagagaaaacagaaaaccgcagacatccttcagaatctg
actggaagaaatatttcagattacctggtgaagacgtatgtgcagatcatagcaaaaagc
ttaaggaataaggtcagggtgaatgagtttcggtatggcgggttttccctgggtgtaagt
aattctcaaagtcttcctccaagccaagaagtcaatgatgctatcaagaaaatgaagaaa
ctcctgaaactgaccaaggacagctctgcagatcggtttctcagcagcttgggaaggttc
atgacaggactggataccaaaaacaatgtcaaggtgtggttcaataacaagggctggcat
gccatcagttcgttcctgaatgtcatcaataatgccattctccgggccaacctacagaag
ggagagaacctgagccagtatgggattacggctttcaaccatcccttgaacctcaccaag
cagcagctctcagaggtggctttgatgaccacatctgtcgacgtcctcgtgtctatctgt
gtcatctttgcgatgtcctttgtcccagccagctttgttgtgttcctgatacaggagcgt
gtgagcaaagccaaacaccttcagttcatcagcggtgtgaagcccgtcatctactggctt
tctaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcgttatcatc
ttcatctgcttccagcagaagtcctacgtgtcctccaccaacctgcctgttctagccctt
ctgctcttgctgtacgggtggtcaattactcctctcatgtacccagcgtcctttgtgttc
aagatccccagcactgcctatgtggttctcaccagtgtgaacctcttcattggcatcaat
ggcagcgtggccactttcgtactggaactctttacaagcaataagctcaatgacatcaat
gacatcctgaaatctgtgtttcttatcttccctcatttttgcctggggcgagggctcatt
gacatggtgaaaaaccaggcgatggcagacgccctggagaggtttggggagaaccgcttc
atctctccactctcttgggacttagtgggacgaaacctttttgccatggccgtggaaggg
gtagtgttcttccttatcactgtcctgatccagtacagatttttcatcaagcccagacct
gtaaaggccaagcttccccctctgaatgatgaggacgaggacgtgaggagggagagacag
aggattctggatggtggcggacagaatgacatcctagagatcaaggaactgaccaagatc
tatagaaggaagcagaagcctgcagtcgacaggatctgcattggcatccctcctggagag
tgctttggactcctgggagttaatggagctgggaagtcatcaactttcaagatgctgact
ggagataccactgtgaccaaaggggatgctctccttaacaaaaacagcatcttaacagat
atccatgaagtacatcagaacatgggctactgccctcagttcgatgccatcacggagctg
ctgactggaagagagcatttggagttctttgccctcttgagaggagttccagaaaaggaa
gttggcaaggttggtgaatgggcaattcgcaaactgggcctcgtaaagtatggagaaaaa
tatgcctgtaactacagtggtggtaacaagcgaaagctttccacagccatggctttgatt
ggcgggcctcctgtggtatttctggatgaaccaaccacaggcatggaccccaaagcccgg
agattcttgtggaattgtgccctaagcattgtcaaggaggggagatctgtagttcttaca
tctcatagtatggaagaatgtgaagctctttgtacaaggatggccataatggtcaatggg
aggttcaggtgccttggcagtgtccaacatctgaaaaacaggtttggagatggttataca
ataattgtacggatagcgggctccaaccccgacctgaagcctgtccaggagttctttgga
cttgcttttccaggaagtgtcctaaaagagaaacatcgaaacatgctacagtatcagctt
ccatcctccttgtcatctctggccaggatattcagcatcctctcccagagcaaaaagcaa
ctccacatagaagactactctgtctctcagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcactacacaaaaaccagaca
gttgtggatgtggccgttctcacatcctttttacaggacgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
