Arvicanthis niloticus (African grass rat): 117708491
Help
Entry
117708491 CDS
T08817
Symbol
Ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
anu03040
Spliceosome
anu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117708491 (Ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
117708491 (Ncbp1)
03015 mRNA surveillance pathway
117708491 (Ncbp1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117708491 (Ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117708491 (Ncbp1)
03041 Spliceosome [BR:
anu03041
]
117708491 (Ncbp1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
117708491 (Ncbp1)
Spliceosome [BR:
anu03041
]
Common components
Common spliceosomal components
Cap binding complex
117708491 (Ncbp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
DUF1690
Cob_adeno_trans
Motif
Other DBs
NCBI-GeneID:
117708491
NCBI-ProteinID:
XP_034358069
LinkDB
All DBs
Position
5:complement(98132715..98169069)
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRRHSYENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDAEMDRIFSTTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVPPTFSALCPAN
PTCIYKYGDESSNSLPGHSVALCLSVAFKSKATNDEIFSILKDVPNPNQVDDDDEGFRFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDKGKLHVLRVMFEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
EAKEKLARQHKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
LTEHLVRCETDGTSILTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
VFQQFCALQA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggaggcggcacagctacgaaaacgatggtggacagcctcacaaaaggaggaag
acatctgatgcaaatgaaactgaagatcatttggaatctttaatatgcaaagtaggagaa
aagagcgcctgctctttagagagcaatctcgaaggcctggctggtgttttagaagctgat
cttcctaactacaagagcaagatcttaaggctcctttgtacagttgcacgtctgctacct
gagaagctgacaatttatacaacattagtcggactgctgaatgccaggaattacaacttt
ggaggagaatttgtagaagcaatgattcgtcaacttaaagagtcactaaaagcaaataat
tataatgaagctgtatatttggtccgtttcctgtctgatcttgtgaattgtcatgtgatt
gctgccccgtctatggttgctatgtttgagaattttgtaagtgtaactcaggaagaagat
gtgcctcaagtgcggcgggattggtatgtgtatgcgtttctgtcgtccttgccctgggtt
ggaaaggagttgtatgaaaagaaagatgcagaaatggaccgcatcttctccaccactgaa
agctatctcaaaagacgccagaagactcacgtgcccatgttacaagtatggactgccgat
aaaccacatccacaagaagagtatttagattgcctgtgggcccagattcagaaattgaaa
aaagaccggtggcaggaaaggcacatcctaagaccctaccttgcctttgacagcatcctc
tgtgaagcactacagcacaacctgcctcctttcacaccaccgcctcacacggaggactcg
gtgtacccgatgcccagggtcatcttcaggatgtttgactacacagatgacccagagggt
cctgttatgccagggagccattcagtagagaggtttgtcatagaagagaatcttcattgc
atcataaaatcctactggaaggaaaggaagacttgcgctgcacagctggtgagctatccg
gggaagaacaagatccccttgaactaccacatagtggaggtgatctttgcagagctgttt
cagcttccagcacctcctcacattgacgtgatgtacactacactgctaatcgaactctgc
aaacttcagccgggctctctgccccaagtgcttgcgcaggcaactgagatgctatacatg
cgtctggacacgatgagtaccacgtgtgtagacaggtttattaattggttttctcatcat
ctaagtaattttcaatttcgttggagctgggaagattggtcagattgtcttactcaggat
cttgaaagtcccaaaccaaagtttgtaagagaagttctagagaaatgtatgaggttgtct
taccatcaacatatattagatattgttcctcccaccttctcagctctgtgtcctgcaaac
ccaacctgcatttacaagtatggagatgaaagtagcaattctcttcctggacattccgtg
gcactctgtttatctgttgcttttaaaagtaaggcaaccaatgatgaaatcttcagcatt
ctgaaagatgtaccaaatcctaaccaggttgatgatgatgatgaagggttcagatttaac
cctttgaaaatagaggtctttgtccagactctgctgcacttagctgccaagtccttcagt
cactccttcagtgcccttgcaaagtttcatgaagttttcaaaactctagcagaaagcgat
aaggggaagctccatgtgctgagagttatgtttgaagtctggaggaatcacccacagatg
attgctgtactggttgataagatgattcgtacacagattgttgactgtgctgcagtagca
aactggatcttctcatcagagctgtcccgtgactttacaaggttgtttgtgtgggaaatt
ttgcactctacaattcgtaagatgaacaaacatgttctgaagatccagaaagagctagaa
gaagctaaagagaaactggcaaggcagcacaaacgacgcagtgacgatgatgacaggagc
agtgacaggaaggatggtgccctcgaggagcaaatagaaaggctgcaggagaaggtggag
tctgctcagagcgaacagaaaaaccttttcctcgtcatcttccagcgtttcatcatgatc
ttgactgagcacctggtacgatgtgaaaccgatggaaccagtatattgaccccatggtat
aagaactgcatagagaggctgcagcagatcttcctgcagcatcaccagataatccagcag
tatatggtgaccctggagaacctgctcttcacagctgagttagatccccacatcctggct
gtgttccagcagttctgtgctctgcaggcctga
DBGET
integrated database retrieval system
