Arvicanthis niloticus (African grass rat): 117708552
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Entry
117708552 CDS
T08817
Symbol
Capn1
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04141
Protein processing in endoplasmic reticulum
anu04210
Apoptosis
anu04217
Necroptosis
anu04218
Cellular senescence
anu04382
Cornified envelope formation
anu05010
Alzheimer disease
anu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117708552 (Capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117708552 (Capn1)
04217 Necroptosis
117708552 (Capn1)
04218 Cellular senescence
117708552 (Capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117708552 (Capn1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
117708552 (Capn1)
05022 Pathways of neurodegeneration - multiple diseases
117708552 (Capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
anu01002
]
117708552 (Capn1)
Enzymes [BR:
anu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
117708552 (Capn1)
Peptidases and inhibitors [BR:
anu01002
]
Cysteine peptidases
Family C2: calpain family
117708552 (Capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
117708552
NCBI-ProteinID:
XP_034358233
LinkDB
All DBs
Position
1:complement(114416358..114437461)
Genome browser
AA seq
713 aa
AA seq
DB search
MAEELITPVYCTGVSAQVQKQRDKELGLGRHENAIKYLGQDYETLRARCLQNGVLFQDEA
FPPVSHSLGFKELGPHSSKTYGIKWKRPRELLSNPQFIVDGATRTDICQGALGDCWLLAA
IASLTLNETILHRVVPYGQSFQDGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHS
AQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILK
ALERGSLLGCSINISDIHDLEAVTFKNLVKGHAYSVTGAKQVTYQGQRVNLIRMRNPWGE
VEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDFIREFTKLEICNLTPDALKS
RTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDNRESGCSFL
LALMQKHRRRERRFGRDMETIGFAVYQVPREMVGQPVHLKRDFFLANASRAQSEHFINLR
EVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEE
EIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDG
NGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLNKKLHELIIT
RYSEPDLAVDFDNFVCCLVRLETMFRFFKILDTDLDGVVTFDLFKWLQLTMFA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggagttaatcacacctgtgtactgcactggggtgtcagctcaagtgcagaag
caacgggacaaggaactgggcttgggccgccatgaaaacgccatcaagtacctgggccag
gattatgagacgctgcgggcaagatgcctgcaaaatggggtcctcttccaagatgaggcc
ttccctccggtttctcatagcctgggcttcaaggaactgggtccccattcctctaaaacc
tatggcatcaagtggaagcgtcctagggaactgctgtcaaacccccagttcatcgtggat
ggagccacccgaacagacatctgccagggagcactgggtgactgttggctcctggctgcc
attgcctccctcactctcaacgagactattctgcaccgagtggttccctacggccagagc
tttcaggatggctacgctggcatctttcatttccagctgtggcagtttggggagtgggta
gacgtggtcgtggatgacttgctacccaccaaggacgggaagctggtgtttgtgcactct
gcccagggcaacgagttctggagtgctctgcttgagaaagcgtatgctaaagtgaatggc
agctacgaggccctttcgggaggctgcacttcagaggccttcgaggactttaccggtggg
gtcactgagtggtacgatctgcagaaggcacccagcgacctctaccagatcattctgaag
gccctggaacgaggctccttgctgggctgctccattaatatctctgatatccatgatttg
gaggctgttacttttaagaacctggtgaagggccatgcatactctgtgacgggtgccaag
caggtaacttaccagggccagagggtgaacctaatccggatgcggaatccctggggagaa
gtggagtggaaaggaccctggagtgacaactcctatgagtggaacaaagtggacccctat
gaacgagagcagctgagggtcaagatggaggatggggagttctggatgtccttccgagac
ttcatccgtgagttcaccaaattggaaatctgcaaccttacccctgatgcccttaagagc
agaaccctccggaattggaataccacattttacgagggcacctggcgccggggaagcacc
gctggaggctgcaggaactacccagctaccttctgggtaaacccccagttcaagatccgg
ttggaggaggtggatgatgcagatgactatgacaaccgagagtctggctgcagcttcttg
ttggccctcatgcagaagcaccgccgcagggagcggcgctttggccgggacatggagacc
attggttttgcagtataccaggtcccccgggagatggtgggtcagcctgtgcacttgaag
cgtgacttcttcctggccaatgcttctcgggcacaatcagaacactttatcaacctccga
gaagtcagtaaccgcatccgcctgccgcccggggagtatatagtagtgccctccaccttc
gagcccaacaaagagggtgactttctgctgcgcttcttttcagagaagaaggctgggacc
caggaactagatgaccagatccaggccaacctccccgatgagaaagttctctctgaagaa
gagatcgatgacaacttcaaaaccttgttcagcaagttggcaggggatgacatggagatc
agcgtcaaggagttacagaccatcttgaacagaatcattagcaaacacaaagacctgcgc
actaatggcttcagcctggagtcgtgccgcagcatggtgaacctcatggatcgagacggc
aatgggaagctgggcctggtggagttcaacatcttgtggaaccgcatccgaaattacctg
accatcttccggaagtttgacctggacaagtctggcagtatgagtgcctacgagatgagg
atggccatcgaggctgcaggcttcaagcttaacaagaagctgcatgaactcatcattacc
cgctactcagagccagacctggccgtggactttgacaactttgtgtgctgccttgtacga
ctggagaccatgttccggtttttcaaaattctggacacagacctggatggtgttgtgacc
tttgatctatttaagtggttacagttgactatgtttgcatga
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