Arvicanthis niloticus (African grass rat): 117708616
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Entry
117708616 CDS
T08817
Symbol
Chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
anu03036
]
117708616 (Chd5)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117708616 (Chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117708616
NCBI-ProteinID:
XP_034358361
LinkDB
All DBs
Position
5:complement(3890870..3943399)
Genome browser
AA seq
1948 aa
AA seq
DB search
MRGPLGTEEELPRLFAEEMENEEEMSEEEDGGLEGFEDFFPAEPVSLPKKKPKKLKESKS
KGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDEDED
DNDEGGLKEPKSSGQLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPM
SKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQVPQPLPVRK
AKTKEGKGPGVRKKNKGAKDSKKKGRGKRVAGLKFRFGGISKRKKGSSSEEDEREDSDLD
NASIHSSSVRSECSAALGKKNKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCP
RAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGCEEEEDDHMEFCRVC
KDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPA
PFMVGLPGPEVEPGMPPPRPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNY
QRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMVHRILNHSF
DKKGDVHYLIKWKDLPYDQCTWEIDEIDIPYYDNLKQAYWGHRELMLGEDARLPKRLVKK
AKKLKDDKQEKPPDTPVVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTI
LADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTG
DKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWA
CLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE
GFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKF
ILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS
SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA
IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK
VMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFK
DDVEGMMSQGQRPTTPIPDVQSTKGGSLAAGAKKKHGSTPPGDNKDVEDSSVIHYDDAAI
SKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREVIKQEENVDPDYWEK
LLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDED
FEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP
PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLT
RIGVMSLVRKKVQEFEHVNGKHSTPDLVPEGPEGKKPVEVISSDPNTPVPASPAQPPSAP
LGLPDKMEAQLGYTDEKESGMQKPKKSLEIQALPTSLDRAEGEDKHQNSDSKDRAREERM
EEVEKVQGSPQQPLKEEVLPDKEPIPDKLELSLSHSRDLRPDDPKTEEKEPVETQQNGDR
EEDEEGKKEDKNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYEIWHRRHDYWLLA
GIVTHGYARWQDIQNDPRYTILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQL
RRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEE
LLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSSQMYNNS
FGPNFRGPGPGGIINYNQMPLGPYVTDI
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccgctgggcaccgaggaggagctgccgcggctgttcgcagaggagatggag
aacgaggaggagatgtcagaagaagaagatggtggccttgaaggctttgaggacttcttc
cctgcagagcccgtgagccttcccaagaagaagccgaagaagctgaaagagagcaagtcc
aaagggaagaggaagaagaaagaggggagcaatgacgagctgtcagagaatgaggaggat
ctggaagagaagtcagagagcgaaggtagcgactactcccccaccaagaagaagaagaag
aaactgaaggagaagaaggagaagaaggccaagcggaaaaagagagatgaggatgaggat
gataatgatgagggaggcttgaaggagcctaagtcttcaggacagctcatggctgagtgg
gggcttgacgatgtggactacctgttttctgaggatgactaccacacactgaccaactac
aaagccttcagccagttcctccggccgcttattgccaagaaaaacccgaagatccccatg
tccaaaatgatgactgtcctgggtgccaagtggcgagaattcagcgccaacaacccattt
aagggtagctcagcagcggcagctgcggcggctgtggctgcggccgtggagacggtgacc
attgctcctccgttggccatcagtccccagcaagtgccccagcctctgcctgtacgcaag
gccaagaccaaagagggcaaggggcccggagtgaggaagaagaataaaggcgccaaagac
tccaagaaaaagggcaggggcaagagagtggcggggctcaagttccgcttcggagggatc
agcaagaggaagaagggttcctcgagcgaggaggatgaacgggaggactcagatttggac
aatgccagcatccacagctcttctgtgcgttctgagtgctctgcagctctgggcaagaag
aacaagaggaggcgcaagaagaagaggattgacgatggtgatggctatgagacagaccac
caggactactgtgaggtgtgccagcagggaggggagatcattctgtgtgacacctgcccg
agggcgtaccaccttgtctgcctggacccggagctggagaaggctcctgagggcaagtgg
agctgcccacactgtgagaaggaggggatccagtgggagccgaaggatgatgatgaggaa
gaggaggagggtggttgcgaggaggaggaggatgaccacatggagttttgccgcgtgtgc
aaggacggtggcgagctcctgtgctgtgatgcctgtccctcctcctaccacttgcactgc
ctcaacccgccgctgccggagatcccgaacggtgaatggctctgcccgcgttgtacatgt
cccccgctgaagggcaaagtccagaggatcctacactggaggtggacggaacccccggct
ccctttatggtggggctgccaggaccagaggtggagccaggcatgcccccgcccaggcct
ctggagggcatacctgagagagagttctttgtcaagtgggctggtctctcctactggcac
tgctcctgggtgaaggagctacagttggagctgtaccacaccgtgatgtatcgaaactac
caaagaaagaatgacatggacgaaccaccgccctttgattacggctctggcgatgaggat
ggcaagagcgagaaacggaagaacaaggaccccctctacgccaagatggaggaacgcttc
taccgttacggcatcaagcccgagtggatgatggtccaccgcatcctgaaccacagcttt
gacaagaagggggacgtacattacctgatcaagtggaaggacctgccctacgaccagtgc
acctgggaaatcgatgagatcgacatcccctactacgacaacctgaagcaggcctactgg
ggccacagggaactgatgctgggagaagatgccaggctgcccaagaggctggtgaagaag
gccaagaaactgaaggacgataaacaagagaagccacccgatacgcccgttgtggacccc
acagtcaagttcgacaagcagccctggtacatcgactccacaggaggcacgctgcaccct
taccagctggagggcctcaactggctacgtttctcctgggcccagggcactgacactatc
ctggctgatgagatgggtttggggaagacagtacaaaccattgtgtttctctactctctg
tacaaggagggccattccaaggggccttacctggtcagcgcacccctgtccaccatcatt
aactgggaacgggagtttgagatgtgggcgcctgacttttacgtggtcacctacacgggg
gacaaggagagccgctctgtgatccgtgagaacgagttttcctttgaggacaacgccatt
cgcggtgggaagaaagtattccgcatgaagaaggaagtgcagatcaaattccacgtgctg
ctcacctcttatgagctcatcaccatcgatcaggccatcctgggctccattgagtgggcc
tgcctcgtagtggacgaggctcaccggctcaaaaacaaccagtccaagttctttagggtc
ttgaatagctacaagatcgactacaagctgctgctgacagggacccccctccagaacaac
ctggaggagctgttccatctcctcaacttcctgaccccggagaggttcaacaatctggaa
ggcttcctggaggagtttgctgacatctccaaggaagatcagatcaagaagctgcatgac
ctgctggggccgcacatgcttcggcggctcaaggccgacgtgttcaagaacatgccggct
aagacggagctgattgtccgcgtggagctgagccagatgcagaagaagtactacaagttc
atcctgacgcggaactttgaggcgctcaactccaaggggggcggcaaccaggtgtctctg
ctcaacatcatgatggatctgaagaagtgctgcaaccatccgtacctcttccccgtggct
gctgtggaggcccctgtgttgcccaatggctcctacgatggcagctccctggtcaagtct
tcagggaaactgatgctgctgcagaagatgctcaagaagctgcgggatgaagggcaccga
gtgctcatcttctcccagatgaccaagatgttggacctcttggaggacttcctggagtat
gagggctacaagtatgagcggattgacgggggcatcaccgggggcctccggcaagaggcc
atcgacagattcaatgctccgggggcccaacagttctgcttcctgctgtcaacgcgcgcc
ggtggcctgggcatcaacctggccacagcagacacggtcatcatttatgactcagactgg
aacccccacaatgacatccaggccttcagccgtgctcaccgcatcgggcagaacaagaag
gtcatgatataccggttcgtgacgcgggcctccgtggaggaacgcatcactcaggtggcc
aagcgcaagatgatgctcacgcacctcgtggtgcggcccggcctgggttccaagtcgggc
tccatgaccaagcaggagctcgacgacattcttaagtttgggacagaggagcttttcaag
gacgacgtggaaggcatgatgtcccagggccagaggcctaccacacccatccctgatgta
caatccaccaagggcggatctctggctgccggcgcaaagaaaaagcacggcagcaccccg
ccaggtgataacaaagatgtagaagacagcagtgtgatccactatgacgacgcagccata
tccaagctgctggatcgaaaccaggacgccacggatgacaccgagctgcagaacatgaac
gagtacctgagctccttcaaggtggcacagtacgtggtccgcgaggaggacggcgtggag
gaggtagagagggaggtgatcaagcaggaggagaacgtggaccccgactactgggagaag
ctgttacgtcatcactacgaacagcagcaggaggacttggcccgcaacctgggcaagggc
aagcgtatccgcaagcaggtcaactacaatgacgcctcccaggaggaccaggagtggcag
gatgagctctcggacaaccagtcagagtattccatcggctccgaggacgaggacgaagac
tttgaggagaggccagaagggcagagtggacggcgacaatccaggaggcagctgaagagt
gacagggacaagcccctgccgcctcttctggctcgggttgggggcaacattgaggttctg
ggcttcaatgccagacagaggaaggcttttttgaatgctatcatgcgctggggcatgcct
cctcaggatgccttcaactcccactggctggtgcgggaccttcgtgggaagagtgagaag
gaattcagggcctatgtatcgctcttcatgcgccatctgtgtgagccgggcgcagacggt
gcggagaccttcgcagacggcgtgccccgggagggcctgtccaggcagcatgtgctcacg
cgtattggggtcatgtcgctggttaggaagaaggtgcaggaatttgagcatgtcaacggg
aaacacagcaccccagacctggtccccgaggggcccgagggcaagaagccggtcgaggtc
atctcctcggaccccaacactcccgtgcctgccagccctgcacagcccccatcggctccg
ctgggcctgccagacaaaatggaagcccagctgggctacacggacgagaaggagtcaggc
atgcagaagccaaagaagtccctggaaatccaggccctgccaacttccctggacagagca
gagggtgaagacaagcatcagaactcagacagcaaggacagagctcgggaggagaggatg
gaagaggtggagaaggtccagggctctccgcagcagcctctgaaagaggaagtgctgccg
gacaaggaaccgatcccagacaaactggagctgagcctgagtcacagcagagatttgagg
ccagatgaccccaagactgaggagaaggagcccgtggagactcaacaaaacggcgacaga
gaggaagacgaggagggcaagaaagaagacaagaacgggaaattcaaattcatgttcaac
attgcggatggcggtttcacagagctgcacacgctgtggcagaatgaggaacgggcggct
gtgtcctcggggaaaatctacgaaatctggcaccgccgtcatgattactggctgctggca
ggcatcgtgacgcatggctatgctcgctggcaggacattcagaatgacccgaggtacacg
atcctcaatgaacctttcaagtctgagattcacaagggcaactacttggagatgaagaac
aagtttttggcccgtaggttcaagctgctggagcaggcgctggtgatcgaggagcagctt
cggagggcagcgtacctcaacatgacccaggatcccaaccacccagccatggcgctcaat
gctcgcctggcagaggtggagtgccttgctgagagccaccagcacctatccaaggagtcc
ctcgctgggaacaagcctgccaacgctgtcctgcacaaggtcctgaatcagctggaggag
ctgctgagtgacatgaaagccgacgtgacacgcttgccctccatgctgtcacgcatcccc
ccggtggctgcccgtctgcagatgtccgaacgcagcatcctgagtcgcctgaccaaccgt
gctggtgaccccaccatccagcagggcgctttcggctcctcacagatgtacaacaacagc
tttgggcccaacttccggggccctggaccgggagggattatcaactacaaccagatgccc
ctggggccctatgtgaccgacatctag
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integrated database retrieval system
