Arvicanthis niloticus (African grass rat): 117708848
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Entry
117708848 CDS
T08817
Symbol
Smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5 isoform X1
KO
K22803
structural maintenance of chromosomes protein 5
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117708848 (Smc5)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
117708848 (Smc5)
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Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_29
AAA_25
SMC_hinge
XLF_CC
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
117708848
NCBI-ProteinID:
XP_034358668
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All DBs
Position
1:complement(130835040..130894445)
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AA seq
1102 aa
AA seq
DB search
MATPSGKAATPNPQVPKRSLPRDASSEVPSKRKNSNPTSTLPRPSGLFVEGSIVRIAMEN
FLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSK
GLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQVGNLCQFLP
QDKVGEFAKLSKIELLEATEKSIGPPEMHRYHCELKNFREKEKQLETSCKEKTEYLEKMT
QRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEGVKLIRDRVKEEVRKLK
EGQIPMTRRIEEIERLRRTLEVRIKEKATDIKEASQKCKQRQDVIERKDRYVKELQQALT
VKQNEEHDRQKRISNTRKMIEDLQNELRTAENCENLQPQIDAITNDLRRVQEEKALCEGE
IIDKQREKEMLEKQKRGVSDHIIRFDNLMNQKEDKLRQRYRDTYDAVLWLRNNKDRFKQR
VCEPIMLTINMKDNKNAKYVENHISSNDLRAFVFESQEDMEIFLREVRDNKKLRVNAVIA
PKISYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTERTRERI
ERVIQETRLKQIYTAEEKYVLKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLK
EINRKLEAVDSGLVILRDTNRRLELKDNELRLKKKELLERKTKKRQLEQKISSKLASIRL
MEQDTCNLEEEERKASTKIKEINVQKAKLVTELTGLVKICTSLHIQKVDLILQNTTVISE
KNKLEADYMASSSQLRVTEQQFIELDDNRQRLLQKCKELMRRARQVCNLSADEAVPQEFQ
TQVPTIPNGHSSSPPMAFQDLPNTLDEIDALLTEERSRASCFTGLNPSVVEEYTKREIEI
QQLTEELKEKKVELDEYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHT
ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE
INQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEP
NRWNLKAFQRRRRRITFTQPSQ
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccgagcggaaaggctgctacccccaacccccaggttcccaagaggtctctc
ccgagagatgcttcctccgaggtcccgagcaagagaaagaactcgaacccgacgtcgacg
ctgccgcggccgtccggactcttcgtcgaaggctcaatcgtccgcatcgccatggagaac
ttcttaacatatgatatctgtgaagtgtctcctggcccccatctgaatatgattatcgga
gccaatggaacagggaagtcaagcatagtgtgtgccatttgccttggactagcaggcaaa
cctgcattcatgggacgtgcagataaggttgggttttttgtgaagagaggatgttccaaa
ggtttggttgaaattgaactgttcaggacttctggaaatcttataatcactcgtgaaatt
gatgtgataaaaaatcagtccttttggttcatcaacaaaaaacctgtaacccagaagata
gtggaagaacaagttgcagccttaaacatccaagtgggcaatctgtgtcagttcttgcct
caggacaaagttggggaatttgctaaactcagcaaaattgaactccttgaagctactgag
aagtcaattggtcctccagagatgcacagataccattgcgaactcaaaaacttcagggaa
aaggagaagcagctagagacctcttgcaaagagaaaactgaatacctagagaaaatgact
cagagaaatgaaaggtacaaacaagatgtggaaagattctatgaacgaaaacgacattta
gatttaattgagatgcttgaggcaaaaagaccatgggtggaatatgagaatgtacgtcag
gaatatgaaggtgtgaaactaattcgtgaccgagtgaaagaagaggtcaggaaacttaaa
gaagggcagattcctatgacacgaaggattgaggaaattgaaaggctgcgtcgcactttg
gaagttcgaatcaaagaaaaggcaactgatattaaggaagcatctcagaaatgcaaacaa
aggcaagacgtgattgaacggaaggatagatatgttaaggagcttcagcaggcattaaca
gtcaagcagaatgaagagcatgaccggcagaagagaataagtaacacccgaaagatgata
gaagatctgcagaatgagctcaggactgcagaaaattgcgagaaccttcagcctcagatt
gatgccatcacaaatgatctgaggcgtgttcaagaggaaaaggccttatgtgaaggcgag
atcattgataaacagagagaaaaggaaatgctggagaaacagaaacgaggtgtgagtgat
catatcatacgttttgacaatcttatgaatcagaaggaagataagctgagacagaggtac
cgggatacatatgatgcagtcttgtggctgagaaacaacaaagacaggtttaaacaaaga
gtctgtgaacccataatgctcacgattaatatgaaagataataaaaatgcaaaatatgtt
gaaaatcatatttcatcaaatgacttaagagcctttgtgtttgaaagtcaagaagatatg
gagattttcctcagagaggttcgtgacaataagaagttaagagtaaatgctgttattgct
cccaagatttcatatgcagacaaagcaccttcaagatctctgaatgagttaaaacagtat
ggatttttttcctaccttcgagagttatttgatgcacctgatcctgtgatgagttacctt
tgctgtcagtatcatattcatgaagttcctgtgggaactgaaagaacccgagaaagaatt
gaacgggtaatacaagaaactcgattaaaacaaatttatacagcagaagaaaagtatgtg
ttaaaaacttctttctattcaaataaagttatttctagtaatacatccctgaaagtagcc
cagttccttactgttactgtggatctagagcaaagaagacacctggaagaacagctaaag
gaaattaatagaaaactggaagcagtggactcaggattggtgatcttgcgtgatacaaac
aggcggcttgagctcaaagacaatgagctaaggctgaagaagaaggagcttcttgaaaga
aaaacaaaaaaaagacagttggaacagaaaatcagctccaagctggcaagtataaggctg
atggaacaggatacttgcaatctagaagaggaagaacgaaaagcaagtaccaaaataaaa
gaaataaatgttcagaaagcaaaacttgttactgaattaacaggccttgtaaagatttgt
acttctttgcatattcaaaaagttgatttgattcttcaaaatactacagtgatctctgag
aagaacaaactagaagcagattacatggcatcatcttcccagctgcgtgttacagaacaa
cagttcattgaattggatgacaacagacagagattattacagaagtgcaaggaacttatg
aggagagctaggcaagtatgtaacctgagtgcagacgaagccgttccccaagaatttcag
acacaagtacccaccattccaaatggacacagctcctcaccccccatggcttttcaagat
ctcccaaacacgttggatgaaattgatgcattactaacggaagaaagatcaagagcttcc
tgctttacaggactgaatccttcggtggttgaggagtacacaaaaagagaaatagaaata
cagcagttaactgaagaactaaaagagaagaaagttgaactagatgaatacagggaaaac
atttcacaggtgaaagaaaggtggctgaaccccttaaaggagttagtagaaaaaatcaat
gagaaattcagcaacttttttagttccatgcagtgtgctggtgaagttgatcttcataca
gaaaacgaggaagattatgataaatatggaatccggattagagtaaaattccgcagtagt
actcagctgcatgaattaactccacatcatcaaagtggaggtgaaagaagtgtttctacc
atgctatacttgatggcacttcaggagcttaacagatgtccattcagagtagttgatgaa
attaatcagggtatggacccaattaatgagcggagagtatttgaaatggttgtgaacact
gcctgcaaagagaacacatcccagtacttcttcatcacgccaaagcttctacaaaatctt
ccttattctgaaaagatgacagtattgtttgtctacaatggtcctcatatgctggaacca
aaccgatggaatttaaaggcttttcaaaggcgtcggcgaaggattaccttcactcaacct
tctcagtga
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