Arvicanthis niloticus (African grass rat): 117708984
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Entry
117708984 CDS
T08817
Symbol
Col8a2
Name
(RefSeq) collagen alpha-2(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117708984 (Col8a2)
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Gene cluster
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Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117708984
NCBI-ProteinID:
XP_034358910
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Position
5:complement(28203110..28228902)
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AA seq
699 aa
AA seq
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MQGALMPLPSLLLLLLGCGPRLSSGGGAGGAAGYAPVKYVQPMQKGPVGPPFREGKGQYL
EMPLPMLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPGVHGQPGPAGPPGFSRMGK
AGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITVPGKPGAQGAPGPP
GFRGEPGPQGEPGPRGDRGLKGDNGVGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGI
PGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVGIPGTAGVPGPQGPAGAKGEPGLR
GPPGLIGPVGYGMPGKPGPKGDRGPVGAPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPG
SAGLPGRRGPPGLKGEVGPGGPPGVPGIRGDQGPNGLTGKPGLPGERGLPGAHGPPGPTG
PKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKG
EPGLPGPPGEGKVGEPGSAGPIGPPGIPGSPGLTGPPGPPGPPGPPGAPGALDETGIAGL
HLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVRFDRTLYNGHSG
YNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAV
LQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgcagggggctctgatgcccttgccttcgctgctgttgttgctgttggggtgtgggcca
agactgtcttctggcggcggagctgggggcgcagctggctatgccccggtaaagtatgtg
cagcccatgcagaaaggaccagtgggaccgcctttccgagagggcaaaggccagtacttg
gaaatgcctctaccgatgctaccaatggacttgaaaggagagccaggaccccctgggaag
ccgggacctcggggtcctcctgggcctcctggcttcccgggaaagccagggactggaaaa
cctggggtccatggacagccaggccctgctggcccccctggcttctcccggatgggcaaa
gctggtcccccagggctcccaggcaaggttggaccaccagggcagccagggctacggggg
gagccagggatacgaggggaccagggcctccgggggcccccaggaccccctggccttccc
ggtccttcaggtattactgtccctggaaaaccaggtgcccaaggggctccagggcctcca
ggatttaggggggagccaggaccccagggagagcctggaccccgaggagacaggggcctc
aaaggggataatggagtgggccaaccagggctgcctggggcccctggacaggcaggtgct
cctgggccccctgggctgcctggtccagctggcttgggcaaaccaggtttagatgggata
ccaggagcccctggagacaaaggtgattctgggccccctggggttccaggctctagggga
gagccaggagctgtgggtccaaaaggcccccctggggtagatggtgtggggataccaggc
acagcaggggtgccagggccacagggtcctgctggggctaaaggggagccagggctccgg
ggtccccctggcctgataggccctgttggctatgggatgccaggaaaaccaggacctaag
ggagacaggggcccagttggggccccagggctcttaggagacagaggtgagccaggagag
gatggggagccaggggagcagggtccacagggacttgggggtccacctggccttcctgga
tctgcaggacttcctggtagacgtgggccccctgggttaaagggagaggtaggacctgga
ggtcccccaggagtgcctggcattcgaggtgaccaagggcctaatggcctgactggaaag
cctgggctccctggtgagaggggacttcctggggcccatggaccccctggaccaactgga
cccaagggtgagccaggttttacaggtcgccctggagggccaggggtagcaggagcccta
ggacagaaaggtgacttggggcttcctgggcagcctggcttgaggggtccctctggaatc
ccaggactccagggtccagctggccctattgggccccagggtctgccaggcctgaagggt
gaaccaggccttccagggcctcctggagagggaaaagtgggggagcccggctctgctggt
cctatagggcctcctggaatccccggctccccagggctcacaggtcctcctgggccccct
gggcctcctgggcctcctggtgctcccggagccttggacgagactggtatcgcaggcttg
catctgcccaatggtggcgtggagggggctgtactgggcaaagggggcaagccacagttt
gggcttggtgagctgtcagcccacgccactccagcctttaccgctgtgctcacctccccc
ttccctgcctcaggcatgccagttaggtttgaccggactctctacaatggccacagcggc
tacaacccagccactggtatttttacctgccccgtgggaggcgtctactactttgcttac
cacgtgcatgtcaagggcaccaatgtgtgggtagccctgtacaagaacaacgtacccgcc
acctacacgtacgacgaatacaagaagggctatctggaccaggcctccggaggggctgtc
cttcagctgcggcccaacgaccaggtgtgggtgcagatgccctcagaccaggccaatggc
ctctactccaccgagtacattcattcttccttctcaggattcttgctctgtcccacataa
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