Arvicanthis niloticus (African grass rat): 117709030
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Entry
117709030 CDS
T08817
Symbol
Clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117709030 (Clstn1)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Cadherin related
117709030 (Clstn1)
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
EphA2_TM
V_ATPase_I
UQ_con
Cadherin_C_2
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
117709030
NCBI-ProteinID:
XP_034358982
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Position
5:complement(6670939..6736796)
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AA seq
980 aa
AA seq
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MLRRPAPALAPAVRLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDSPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCEL
QKDYTFTIQAYDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKAAVVEGKQHA
SILRVEAVDADCSPQFSQICSYEILTPDVPFTVDKDGYIKNTEKLNYGKEHQYKLTVTAY
DCGKKRATEDVLVKISVKPTCSPGWQGWSNRIEYEPGTGALAVFPSIHLETCDEPVASVQ
ATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTSELLPSPSSSFNWTVGLPTDNGHDSD
QVFEFNGTQAVRIPDGVVTLDPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSL
YVHGCRLVFLLRQDPSEEKKYRPAEFHWKLNQVCDEDWHHFVLNVEVPSVTLYVDGVSHE
PFSVTEDYPLHPTKIETQLVVGACWQEYSGVESGNETEPVTMASAGGDLHMTQFFRGNLA
GLTVRSGKLADKKVIDCLYTCKEGLDLQVPEDSNRGVQIQASSSQAVLTLEGDSVGELDK
AMQHISYLNSRQFPTPGIRRLRITSTVKCFNEAACIEVPPVESYVMVLQPEEPKISLSGV
RHFARAASEFESPEGVSLFPELRIISTITREVEPEADGAEDPTVQESLVSEEIAHDLDTC
EVTVEGEELNPEQERLEVDVARLQQKGIEVSHSDLGVVFTGVETMASYEEALHLLRYRNW
HTRSLLDRKFKLICSELNGRYLSNEFTVEVNVIHTANPVEHANHMAAQPQFVHPEHRSFV
DLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEESEDGEEEEEDITSAESESSEEEEGG
PGDGQNATRQLEWDDSTLSY
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccctgcgcccgcgctggccccggccgtccggctgctgctggcggggctg
ctgtgcggcggcggggtctgggccgcgcgagttaacaagcacaagccatggctggagccc
acctaccacgggatagtcaccgagaatgataacaccgtgctgctcgaccccccactcatc
gccctggataaagattcaccgctacgctttgcagagagttttgaggtgacagtcaccaaa
gaaggtgagatttgtggctttaaaattcacgggcagaatgtcccctttgatgccgtggta
gtggataagtccacgggtgagggaataatccgatcaaaagagaaactggactgtgagcta
cagaaagactacacatttaccatccaggcctacgactgcggcaagggacctgatggcact
ggtgtgaaaaagtctcacaaagcgaccgtgcacatccaggtgaatgacgtgaatgagtat
gccccggtgttcaaggagaagtcatacaaggcggccgtggtggagggcaagcagcacgcc
agcatcctcagggtggaggcggtggacgcagactgctccccgcagttcagccagatctgc
agctatgagattcttaccccggacgtgccattcactgtggacaaagacggttatattaaa
aacacggagaagctaaactatggcaaagagcatcagtataagctcacagtcacagcctat
gactgtgggaagaaaagagccactgaggacgtcctggtgaagatcagcgttaagcccacc
tgcagccccgggtggcaaggctggagcaacagaatcgagtatgagcccggtacgggtgct
ttggccgtcttcccgagcatccacctggagacctgtgacgagcctgtcgcctctgtgcag
gccacagtggagctggagaccagccacatagggaaaggctgcgaccgagatacctactct
gagaaatcccttcaccggctctgtggggctgcggccggaacctcggagctgcttccatct
cctagtagctccttcaactggactgtgggcctcccgaccgacaatggccatgacagtgac
caggtctttgagttcaatggcactcaggcggtgaggattccagacggtgttgtaaccctt
gaccctaaagagcctttcacaatttctgtgtggatgcggcatggaccttttggccggaag
aaggagacaattctctgcagttcggataaaacagatatgaaccgccaccactattcgctc
tatgtccacgggtgcagactcgttttcctcctccgtcaggatccatctgaggagaagaaa
tacaggcccgcggagttccactggaagctgaaccaagtctgtgatgaggactggcaccac
tttgtcctcaatgtggaagtcccaagtgtgactctctatgtggatggcgtctctcatgag
cccttctccgtgacagaagactacccacttcatccaaccaaaatagaaactcagcttgtg
gtcggagcttgctggcaagagtattcaggagtcgagagtggcaatgagactgagcctgtg
acgatggcctctgcaggtggtgacctgcacatgacacagtttttccgaggtaacctggct
ggcctcacggtccgatctgggaaactggcagacaagaaggtgattgactgtttgtacacc
tgcaaggaggggctggacctgcaggtccctgaagacagcaacagaggtgtgcagatccaa
gcaagctccagtcaggcggtattgaccttggagggagacagtgttggagagctggataag
gccatgcaacatatttcctaccttaactcgaggcagttccccaccccaggcatccgcagg
ctcagaatcaccagcactgtcaagtgttttaatgaggcggcttgcatcgaggtgccccca
gtggagagctacgtgatggtcttgcagccggaagaacctaagatcagcctgagtggtgtc
cgccactttgcccgggcagcttctgagtttgagagtccagagggtgtctccctcttcccg
gagcttagaatcatcagcaccatcaccagggaggtggagcccgaggcagatggggccgag
gaccccacagtgcaagagtccctggtgtcggaggaaattgcgcatgacctggacacctgt
gaggtcacggtggaaggggaggagctgaaccccgagcaggagcgcctagaggtagacgtg
gcccgcctccagcagaagggcatcgaagtgagccactctgacctgggcgtggtcttcaca
ggtgtggagaccatggcaagctacgaggaggctctgcacctcctgcgctatcggaactgg
cacaccaggtccctgctggaccggaagttcaagctcatttgctcagaactaaatggtcgc
tacctgagcaatgagttcacagtggaggtgaatgtgatccacacagccaaccctgtggag
cacgccaaccacatggctgcccagccacagtttgtccaccctgaacatcgatcctttgtg
gacctgtcgggtcacaacctggccaatcctcacccatttgcagttgtccccagcacggcg
actgtcgtgattgtggtatgtgtcagcttcctggttttcatgatcatcttgggggtgttt
cggatccgggctgcacatcagcgaacgatgcgggaccaggacacggggaaggagaacgag
atggactgggatgactctgccctgaccatcactgtcaaccccatggagacatatgaggac
cagcacagcagtgaggaggaggaagaggaagaagaggaagaggagagtgaagacggggag
gaggaggaggaggacatcaccagtgccgagtcagagagcagtgaggaggaggaaggcggc
cccggggacggccagaatgccaccagacagctggaatgggatgactccacactcagctac
tag
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