Arvicanthis niloticus (African grass rat): 117709357
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Entry
117709357 CDS
T08817
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117709357 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117709357 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117709357 (Ndc1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117709357 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
117709357
NCBI-ProteinID:
XP_034359575
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Position
5:complement(43035118..43079547)
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AA seq
776 aa
AA seq
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MQHRRPLFLTPRWTLLRKDFLDSRARFLESQPTWGHVATGKFCPVESVQAKLRRDGLAAL
QDTAQAAFRAAPAGSSRGLPAFEQWWRAGTLSPARLRVGAAISMATAASGPCAGGSPRDI
LWRVLGWRIVTSIVWSVLLLPVCIAAFIVFSSIDLFHPIQWLSDSLNEFYSSQVIFYLLL
LAVVIIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSFIHAAMGMAVAWCAAIMT
KDQYSSLVVPCTGTESFDNPAAQTCMNEYHLFFLLSGAFMGYSYSLLYFINNMNYLPFPI
IQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPKAWISAALDLHTDEQAHR
PLDTIGGLLNISLLYHVWLCGVFLLMTWYTSWILFKIYATEAYVFPVQPPFAEESDECLP
KVLNSNPPLIIKYLALQDLMLLSQHSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNDM
TQKLVLYQEAAATNGRMYSSYSVEPKKLSSPEETAFQTPKPSQMSSVPPLVKSSLFSPKL
STPDVSSPFGTPFGSNVVNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTHTSDQQVSAISN
PSPCASVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDA
QMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRT
SGSLVDTSYKTLRFAFRASLKTAIYRITTTFGDHLNAVQASAEHQKRLQQFLEFKE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccgtcgccctttgtttttgacgccccgatggaccctgctacggaaggacttt
ttggactccagagcacggttcctcgagtcacagcccacctgggggcatgtggctacgggg
aagttctgcccggttgaatctgttcaggcgaagctgcggagagatggtctggcggctttg
caggacactgcccaggcagcgttccgggcagccccagctgggtcctcccggggccttcct
gcctttgaacagtggtggcgggcgggcactctgtccccggcacgcttgagagtgggggcc
gccatctccatggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatc
ctttggcgcgttttgggttggaggatagttaccagcatcgtgtggtcagtactgcttctg
cccgtctgcatcgcagcctttatcgtcttcagcagcatcgatttattccaccctatacag
tggctgtcagattctctcaatgaattctatagttcccaagtaatcttttacctcctgctg
cttgcagtggtcattataataataagtattttcaatgtggagttctatacagttgtgccc
tccatccctggctcccgactggccctgatagcacggatccttcacccccagcaactcacg
cactccttcatacacgctgccatgggaatggcagtggcttggtgtgcggccatcatgacc
aaggaccagtacagttctctcgtggttccctgcactggaactgagagcttcgataaccct
gctgctcagacctgcatgaacgagtatcatctgtttttcctactgtctggagcattcatg
ggctatagctatagtcttctgtatttcattaacaacatgaattatcttccgtttcctatt
atacagcagtacaaatttttacgtttccggagatctctcctcttactagttaaacatagc
tgtgtggaatccctgttcatggtcagaaatttctgcattgtatattatttttttggccat
attcccaaagcgtggattagcgctgcactggaccttcacacagatgagcaggctcacaga
cctcttgacacgataggtggcctcctgaacatctcattactctaccatgtatggctgtgt
ggtgtctttctcttgatgacttggtatacctcatggatactcttcaaaatttatgccaca
gaggcttatgtgttccctgttcagccaccatttgccgaagaatcagatgaatgccttcct
aaagtgttaaatagcaatcccccactcattataaagtatttggccttacaggacctgatg
ttgctttctcaacattctccttctcgaaggcaagaagttttcagccttagccaaccaggt
ggacatccccataactggactgccatttcgagggagtgtttgaatcttttaaatgatatg
actcaaaaactggttctctaccaagaagctgctgctacaaatgggaggatgtattcatca
tactcagtggaacccaagaaattgagttctccagaagaaactgcttttcagactccaaaa
cctagccagatgtcttctgtgccgccattagttaaatcttcactgttttctccaaaatta
tctacacccgatgtttcaagtccttttggaaccccgtttggctccaatgtagtgaaccga
atggctggaatttttgatgtaaacacctgctatgggtctccccagagtcctcagctcata
agaagagggccgagattgtggactcacacttctgatcagcaagtgtctgcaatttctaat
ccatctccttgtgcctctgttactgctgagggtaagacagtgagacagcccagtgtcatc
tactcgtggattcagaataaacgtgaacagattaagaattttttgtcaaaacgggtgctg
ataatgtactttttcagtaagcacccagaggcctccattcaagctgtgttttcagatgcc
caaatgcatatttgggctttagaaggtctgtctcacttagtagcagcatcatttaccgaa
gatagatttggagttgtccagaccacactcccagctatccttaatactttgttgactctg
caggaggctgtcgacaagtactttaagctgcctcatgcttctagtaaaccaccccgaact
tcaggaagccttgtggacacgtcctacaaaacattaagatttgctttcagggcctcactg
aaaaccgctatctaccgtataaccaccacgtttggtgaccatctgaatgctgtgcaggca
tctgcagaacatcagaaaagacttcagcagttcttggagttcaaagaatag
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