Arvicanthis niloticus (African grass rat): 117709901
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Entry
117709901 CDS
T08817
Symbol
Smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03082
ATP-dependent chromatin remodeling
anu04714
Thermogenesis
anu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117709901 (Smarcd2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
117709901 (Smarcd2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
117709901 (Smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117709901 (Smarcd2)
03036 Chromosome and associated proteins [BR:
anu03036
]
117709901 (Smarcd2)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117709901 (Smarcd2)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117709901 (Smarcd2)
PBAF complex
117709901 (Smarcd2)
GBAF(ncBAF) complex
117709901 (Smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
117709901
NCBI-ProteinID:
XP_034360205
LinkDB
All DBs
Position
6:16138670..16148293
Genome browser
AA seq
531 aa
AA seq
DB search
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPNPALRGPGPSGGMGVPGAAAFR
PMVPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLL
VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
QEAIKKPLTQKRKLRIYISNTFSPSKADGDNAGTAGTPGGTPAADKVASWELRVEGKLLD
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLK
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggccgtggcgcgggcgggttcccgctgcccccgctgagccccggcggcggcgct
gttgccgcggcccttggtgcaccgcctccgcctgcgggacccggaatgctgcctaacccg
gcgctcaggggcccggggccttctggaggcatgggggtaccgggggccgccgccttccgt
cccatggtccccgcgggccccgcggcgcagtaccagcgacctggcatgtcaccaggaagc
aggatgcctatggctggcttgcaggtgggacctccagccggttccccatttggcacagct
gctccgcttcgacctggcatgccacctaccatgatggatccattccgaaaacgcctgctt
gtgcctcaggcccagcccccgatgcctgcccagcgccgagggttaaagaggaggaagatg
gcagataaggttctacctcagcggatccgcgagcttgtcccagagtctcaggcatacatg
gatcttttagctttcgagaggaagctggaccagaccattgctcgcaagcggatggagatc
caagaggccatcaagaagcctctgacgcaaaagcgaaaacttcggatctatatttccaat
acattcagccccagcaaggcagatggagataatgcaggaactgcagggacccctggggga
accccagcagcagacaaggtggcctcctgggagcttcgagtagagggaaaacttctggat
gatcctagcaaacagaagaggaagttctcatcattctttaagagccttgttattgagttg
gacaaggaactgtatgggcctgacaaccatctggtggagtggcatcggatgcccaccaca
caggagacagatggctttcaggtgaaacggccaggagatctcaatgtcaagtgcactctt
ctgctcatgctggatcatcagcctcctcagtataaactggacccccgcctggcgaggttg
ctgggagtgcacacacagacaagggctgccatcatgcaggcactgtggctttacatcaaa
cacaaccagctgcaggacggccatgagcgagagtacatcaactgcaatcgttacttccgc
cagatcttcagttgtggccgactccgtttctccgagattcccatgaagctggctggattg
ctgcagcatccagaccccattgttattaatcatgtcattagtgtggacccgaatgaccaa
aagaagacagcctgctatgacattgatgtagaggttgatgacccactgaaggcccagatg
agcaacttcctggcctctaccaccaaccagcaggagattgcctctcttgatgtcaagatc
catgagaccattgagtccatcaaccagctaaagacccagagggatttcatgctcagcttt
agcactgagccccaggacttcatccaggaatggctccgttcccaacgcagagacctcaag
atcatcacagatgtgattgggaaccctgaggaggagagacgagccgccttctaccaccag
ccctgggctcaggaagcggttgggaggcacatctttgccaaggtgcagcagcgaaggcag
gaactggaacaggtgctgggaattcgcctgacctaa
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