Arvicanthis niloticus (African grass rat): 117710062
Help
Entry
117710062 CDS
T08817
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117710062 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117710062 (Prpf8)
Spliceosome [BR:
anu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117710062 (Prpf8)
Complex C
U5 SnRNP specific factors
117710062 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117710062
NCBI-ProteinID:
XP_034360473
LinkDB
All DBs
Position
6:complement(46291665..46316168)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgtttccttaccgagggccgggtaacccggtgcccggccctctagccccg
ctgccggattacatgtcagaggagaagctgcaggagaaagctcgaaaatggcagcagttg
caggccaagcgttatgcagagaaacggaaatttgggtttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaagatcattcgagaccatggagacatgaccaacaggaaa
ttccgtcatgacaaaagggtctatttgggagctctcaagtacatgcctcacgcagttctc
aagctcctggagaacatgcccatgccctgggagcagatccgggatgtgcctgtgctgtac
cacatcactggggccatttcctttgtcaatgagattccttgggttattgagccggtttac
atctcccagtgggggtcaatgtggatcatgatgcgtagagaaaaaagagacaggaggcat
ttcaagaggatgcgtttcccccctttcgatgatgaggaaccgcccctggattatgctgac
aacatcttagatgttgagccactggaagccattcagctagagctggaccctgaagaggat
gcccctgtgttggactggttctatgaccaccagccattgagagacagtagaaagtatgtt
aatggctccacctaccaacgctggcagttcacgttgcctatgatgtccactctctaccga
ctggccaatcagcttctgactgaccttgtagatgacaactacttctatctctttgatctg
aaggccttttttacctctaaggcactcaacatggccattcctgggggacccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgaattcaatgatattaat
aagatcattatccgtcagcctattcgtaccgagtacaagattgcttttccttacctgtat
aacaaccttccacaccacgtccacctgacctggtaccacactcctaacgttgtgttcatc
aagactgaggatcctgatttgccagctttctactttgatcctctgatcaacccaatctcc
catagacactcagtcaagagccaagagccactgcctgatgatgatgaggagtttgaactc
ccagagtttgtagagcccttcctgaaggatacacctctctatacagacaatacagccaat
ggcatcgccctgctctgggcaccacggcccttcaacctacgctctggtcgtacccgccgg
gccctcgacataccccttgtcaagaactggtatcgggagcactgtcctgctgggcagcct
gtgaaagttcgagtctcctatcagaagctgcttaagtattatgtgctgaatgctctcaag
caccggcctcccaaagcccagaagaagaggtatctatttcgctctttcaaagctaccaaa
ttctttcagtccaccaagctggactgggtggaggtagggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccgtaagaacctcaactacctgcacttggactac
aacttcaacctgaagcctgtcaagacgctcaccaccaaggaaagaaagaaatctcgtttt
gggaatgctttccatctgtgtcgggaagtactgcgtttaactaagctggttgtggacagt
catgtgcagtatcgtttgggcaatgtagatgccttccagctggcagatggattgcagtat
atatttgcccacgtgggacagttgacaggcatgtatcgatacaaatacaagctgatgcgg
cagatccgcatgtgcaaggacttgaaacatctcatctactaccgcttcaacacgggtcct
gtagggaaaggccctggctgtggtttctgggctgctggctggcgggtctggctgttcttt
atgcgtggaatcacccctctgctagagcgatggctgggcaaccttctggcccgacagttt
gaaggccgtcactcaaagggggtggcaaagacagtgacaaagcaacgcgtagagtcccat
tttgacctggagcttagggcagccgtgatgcacgatattctggacatgatgcctgaaggc
atcaaacagaacaaggcccgaacaatcctgcagcacctcagtgaagcctggcgctgctgg
aaggccaacattccttggaaggtcccaggactgccaacacctatagagaatatgattctt
cggtatgttaaggccaaggctgattggtggaccaatactgcccactacaaccgtgaacgg
atccgtcgtggggctactgtagacaagactgtttgcaaaaagaacctgggccgcctcact
cgcctgtatctgaaggcagaacaggaacggcagcacaattacctgaaggatggcccttac
atcacagcagaggaagcagtggcagtgtatacgaccacagtgcactggttggaaagccgt
agattctctcccatcccgttccccccactctcctacaagcatgataccaagttgctcatc
ttggctctggagcgtctcaaggaagcttatagtgtgaagtctaggttaaaccagtctcag
agggaggagctgggtctgattgaacaagcctatgacaacccccatgaggctttgtcccgc
atcaagcgtcacctcctcacacagagagcctttaaggaagtaggcattgagtttatggat
ctctatagccaccttgtgccagtgtatgatgtggagccactggagaagataactgatgct
tacctggaccagtacctgtggtatgaagcagataaacgccgtcttttcccaccctggatc
aagcccgctgacacagagccacctccactgcttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagacgagtgagggcgagtgcaacgtcatgctggagtctcgg
tttgagaagatgtatgagaagattgatctgaccctgcttaacaggctgctgcgactcatt
gtggaccacaacatagctgactacatgaccgccaagaacaatgtagtcatcaactacaag
gacatgaaccatacaaattcttatggaatcatcagaggcctgcagtttgcttcattcatt
gtccagtactatggtttggtgatggacttgcttgtcctgggattacaccgggccagtgag
atggctgggcctccccagatgccaaatgactttctcagctttcaggacatagccactgag
gctgcacacccaatccgactcttctgtagatacattgatcgcatccatatcttcttcagg
ttcacagcagatgaggctcgggatctgatccagcgttacctgacagaacatccagacccc
aacaatgaaaacattgttggctacaataacaagaaatgttggccccgagatgcccgcatg
cgtctcatgaagcatgatgtcaacttgggtcgggcagtattctgggacatcaaaaaccgg
ctgccacgatcggtgactacagtacagtgggagaatagctttgtgtctgtatacagtaaa
gacaaccccaacctgcttttcaacatgtgtggctttgagtgccgcatcctgcctaagtgc
cgtaccagctatgaagagttcacccacaaggacggggtctggaacctacagaacgaggtt
accaaggagcggacagctcagtgtttcctgcgtgtggatgatgagtcgatgcaacgcttc
cataaccgagtgcggcagattctgatggcctctggctccaccactttcaccaagattgtg
aataagtggaacacagctctcatcggccttatgacatattttcgagaggctgtggtgaat
acacaggaactcctagacttattggtgaagtgtgaaaacaagatccagacacgtatcaag
attggattgaactccaagatgccaagtcggttcccccctgttgtcttctatacccctaag
gagctgggtgggcttggcatgctctcgatgggccatgtgcttatcccccagtctgacctc
aggtggtccaagcagacagatgtgggcatcacacacttccgttcaggaatgagtcatgaa
gaagaccaactgattcccaacttataccgctacatacagccatgggagagcgagttcatt
gactcccaacgggtctgggctgagtatgcactcaagagacaagaggctattgctcagaac
agacgcttgactttagaagatttagaagattcatgggatcgaggcattccccggatcaat
accctcttccagaaagaccggcatacactggcttatgataaaggctggcgtgtccgaact
gactttaagcagtaccaggttttgaagcagaaccccttttggtggacacatcagcggcat
gatggcaagctttggaacctcaacaactaccgcacagacatgattcaggcactgggtggt
gtggaaggcattctggagcacactctcttcaagggcacttacttccccacctgggaaggt
ctattctgggagaaagccagtggctttgaggaatccatgaagtggaagaagctgaccaat
gctcagcgatcaggattaaatcagattcccaatcgtagattcaccctctggtggtcccca
acaatcaatcgagccaatgtatatgtaggcttccaggtgcagctggacttgacaggaatc
ttcatgcatggcaagatccccacgctgaagatctctctcatccagatattccgagctcac
ttgtggcagaagatccatgagagcattgtgatggacttgtgtcaggtttttgaccaggaa
ctggatgcactggaaattgagacagtacaaaaggagacaatccatccccgaaaatcctat
aagatgaactcttcctgtgcagatatactactctttgcttcctataagtggaatgtttcc
cggccctcgctgctggcagactccaaggatgtgatggacagcaccaccacacagaagtat
tggattgacatccagttgcgctggggggactatgactcccatgatattgagcgctacgcc
cgggccaagttcttggattacaccacagacaacatgagtatctacccttcacccacgggt
gtgctcattgccatcgacctggcctataacctgcacagtgcctatggaaactggttcccg
ggcagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaaccctgccctg
tatgtgttacgtgaacggatacgcaaaggactgcagctgtattcatctgagcccactgag
ccctacctgtcctctcagaactatggtgaactcttctctaaccagattatctggtttgtg
gatgacaccaatgtctatagagtaactatccacaagaccttcgaggggaacttgacaacc
aaacccatcaatggggccatcttcatcttcaatccacgcacaggacagctcttcctcaag
ataatccacacatctgtatgggctggacagaagcgtttaggtcagttggccaagtggaag
actgctgaggaagtggctgccctgatccgatctctgcctgtggaagaacagcctaaacag
atcattgtcactcggaagggcatgctggatcctctggaggtacacttactggacttcccc
aatattgtgatcaaaggatcagagctccagctgcccttccaggcttgtctcaaggtggag
aagtttggggatctcattcttaaagccacagagccccagatggttctcttcaacctctat
gatgactggctcaagaccatctcttcctacacggctttctcccgtctcattttgattctg
cgagctttgcatgtgaacaatgatagagcaaaggtgatcctgaagccagacaagactact
gttacggaaccccaccatatctggcccacgctgactgacgaggagtggatcaaggtggag
gtacagctcaaggatctgatcttggctgattatggcaagaaaaacaatgtgaatgtggca
tcactgacacaatcagaaattcgagacatcatcctgggaatggagatctcagcaccatcg
cagcagcggcagcagatagctgagattgaaaagcagaccaaggaacagtcccagctcact
gctacacagactcgaactgtcaacaagcatggcgatgagatcatcacctcaaccaccagc
aactatgagacccagaccttctcatccaagactgaatggagagtcagggccatctctgct
gccaacctgcatctacgaaccaatcacatttatgtttcatctgatgacatcaaggagact
ggttatacgtacattcttcccaaaaacgtgcttaagaagtttatctgcatttctgatctt
cgtgcccaaattgcaggatatctgtatggggtgagccctccagataaccctcaggtgaag
gagatccgttgtattgtgatggtgccacagtggggcactcaccagactgtgcacctgccc
agccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccacact
cagcccaatgaatccccccagctgtcaccccaagatgtcaccactcatgccaaaatcatg
gctgacaatccatcttgggatggggagaagactattatcatcacctgcagcttcacacca
ggctcctgcacactgacagcctacaagctgacccccagtgggtatgagtggggacggcag
aacacagacaaaggcaacaaccccaaaggctacctaccttcgcactacgagagggttcag
atgctcctgtcagaccgattcctcggcttctttatggtccctgcccagtcctcttggaac
tacaactttatgggtgttcgacatgatcccaacatgaaatacgagctgcagctggcaaac
cccaaggaattctaccatgaagtccacaggccttcccacttcctcaactttgccctccta
caggagggtgaggtatactctgcagacagagaggacctctacgcctag
DBGET
integrated database retrieval system
