Arvicanthis niloticus (African grass rat): 117710071
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Entry
117710071 CDS
T08817
Symbol
Utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117710071 (Utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
anu03009
]
117710071 (Utp18)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117710071 (Utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WDR55
WD40
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR19_1st
CFAP43_N
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_Vps41
WDR90_beta-prop_4th
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
117710071
NCBI-ProteinID:
XP_034360504
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All DBs
Position
6:28518810..28545006
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AA seq
646 aa
AA seq
DB search
MLPLRSCVGKNFHSSHAASPYTRKIGLPRGTPTRGGAAELSGSDVARECRSRGSRRRRLL
PAPRGPAATRSETPWHMRSGAPRERLRFSSDLRMPPERRSRTKRDRRAGAMPGRKARPRS
GSTPGKAARSSQRTPPAGPRAAPSAVSAAAAAAAAEEESRLRQRNRLTLEDDKPAAERCL
EQLVFGDVEDDEDALLQRLRSSRGQLHGSSDDSEVENEAKGSLSQKKKPVWVDEDDEDDE
IVDMMNNRFRKDIMKNASESKLSKDKLQKRLKEEFQHAMGGVPDWAETGSKRRTSSDDES
EEDEDDLLQRTGNFISTSTSLPRGILKMKNCRPANAERPTTARISSVQFHPGAQVVMVSG
VDNAISLFQVDGKTNPKIQSIYLEKFPIYKACFSANGEEVLATSMHSKVLYVYDMLAGKL
IPVHQVRGLKEKIVKRFEVSPDGSFLLISGIAGFSHLLLMKTKELIGSMKINGRIAASTF
SSDSKRIYTSSGTGEVYVWDVNSRKCINRFLDEGSLCGLSIAASKNGQYVACGSKSGVVN
IYNQDSCLQQTNPKPIKAIMNLVTGVTSLAFNPTTEILAVASRKIKEAVRLVHLPSCTVF
SNFPVFKKSAVSRVQTMDFSPRGGYFALGNEQGRALMYRLHHYSDF
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctgagaagttgtgttgggaaaaatttccactccagtcacgccgcttccccc
tacacccggaagattggccttcccagaggaactcccacacggggaggggctgccgagctg
agtgggagtgacgtagcgcgtgagtgtcggtcacgtggctcgaggcggcgcaggctcctt
ccggctccccggggcccggccgcgacgaggagcgagacgccctggcacatgcgcagtggt
gctccacgtgaacgtctgcgtttctcctcagacctgaggatgccgcctgaacgcaggagc
cggacgaaacgagatcggagagccggcgcaatgccggggaggaaagccagacccaggagc
ggcagcacgcccggaaaggccgcccgttcatcccaacggacaccgcctgccgggccgagg
gcggcccctagcgcggtatccgcagcggcggcggcggcggcggcggaggaggagagccgg
ctccggcagcggaaccgcctgacgttagaggacgacaagccggccgccgagcgttgcctg
gagcagcttgtcttcggcgacgtcgaggacgacgaggacgcgctgctgcagcggctgcgg
agctcgcggggtcagctacatggaagctcagatgactcggaagtggaaaatgaagcaaag
ggcagtctttctcagaagaagaagccagtttgggtggatgaagatgatgaagatgatgaa
atagttgacatgatgaacaatcggtttcggaaggatataatgaaaaatgccagcgaaagt
aaactttcaaaggataaacttcaaaagagacttaaagaagaattccagcatgccatggga
ggagtacctgattgggcagagactgggagcaagcggaggacatcttcagatgatgaaagc
gaagaggatgaagatgatttgttgcaaaggactgggaatttcatatccacatccacttct
cttccaagaggaatcttgaagatgaagaactgccggcctgccaatgctgaacggcctacc
actgctcggatctcatcagtacagttccatcctggtgcacaggtggtgatggtctctggg
gtagataatgctatctcactgtttcaggttgatggcaaaacaaaccctaaaattcagagc
atctatttggaaaagtttccaatctataaggcttgtttcagtgctaatggagaagaggtt
ttagccacaagtatgcacagcaaggttctttatgtctatgatatgctagctgggaagtta
attcctgtacatcaagtgagaggtttgaaagaaaaaatagtgaagcgatttgaagtctcc
ccagatggatccttcttgctcataagtggcattgctggcttttctcatttgctattaatg
aagaccaaagaactgataggtagcatgaagattaatggacgaattgcagcatccacattc
tcttcagacagtaagaggatatatacctcctctgggactggagaagtttatgtgtgggac
gtgaattcgaggaagtgcattaacaggtttcttgatgaaggcagtttatgtggattaagc
attgctgcgtcaaagaacggacaatatgtggcttgtggttctaagagtggagtggtaaat
atatacaatcaagattcctgtctccaacaaacaaacccaaagccaataaaagcaataatg
aacctggttactggtgttacttccttggccttcaatcctaccacagaaatcttggcagtg
gcttcaagaaaaattaaagaagctgtcagattggttcatcttccttcctgtacagtattt
tctaactttccagtttttaaaaagagcgctgtttctcgtgttcaaaccatggatttttct
cccagaggtggatactttgccttagggaatgagcagggcagggctctgatgtataggttg
catcattactcagacttctga
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