Arvicanthis niloticus (African grass rat): 117710364
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Entry
117710364 CDS
T08817
Symbol
Cacna1h
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04010
MAPK signaling pathway
anu04020
Calcium signaling pathway
anu04713
Circadian entrainment
anu04925
Aldosterone synthesis and secretion
anu04927
Cortisol synthesis and secretion
anu04929
GnRH secretion
anu04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117710364 (Cacna1h)
04020 Calcium signaling pathway
117710364 (Cacna1h)
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
117710364 (Cacna1h)
04925 Aldosterone synthesis and secretion
117710364 (Cacna1h)
04927 Cortisol synthesis and secretion
117710364 (Cacna1h)
09159 Environmental adaptation
04713 Circadian entrainment
117710364 (Cacna1h)
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
117710364 (Cacna1h)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117710364 (Cacna1h)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117710364 (Cacna1h)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117710364
NCBI-ProteinID:
XP_034360972
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All DBs
Position
6:90226302..90250056
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AA seq
2253 aa
AA seq
DB search
MLVIMLNCVTLGMFRPCEDVECRSERCSILEAFDDFIFAFFAVEMVIKMVALGLFGQKCY
LGDTWNRLDFFIVMAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDSAFVRNNNLTFLRPYYQTEEGEE
NPFICSSRRDNGMQKCSHIPSRRELRVQCTLGWEAYGQPQAEDGAASHNACINWNQYYNV
CRSGEFNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVG
SFFMINLCLVVIATQFSETKQRENQLMREQRARYLSNDSTLASFSEPGSCYEELLKYVGH
IFRKVKRRSLRLYARWQSRWRKKVDPSSTLHGQGPGRRPRRTGRRTASVHHLVYHHHHHH
HHHYHFSHSGPRRPSPEPGAGDTRLVRACMPPSPPSPGHGPPDSESVHSIYHADCHVEGP
QERARVAHSIATAAGLKLASGLGTMNYPTILPSGTVNSKGGASSRPKGLRGAGTPGATAH
SPLSLGSPSPYEKIQHVVGEQGLGRASSHLSGLSVPCPLPSPQAGTLTCELKSCPYCASA
LEDPEFEFSGSESGDSDAHGVYEFTQDVRHGDCRDPVQQPHEVDTPGHGNERRRTPLRTA
SQPGGLGRLWASFSGKLRRIVDSKYFNRGIMAAILVNTLSMGVEYHEQPDELTNALEISN
IVFTSMFALEMVLKLLACGPLGYIRNPYNIFDGIVVVISVWEIVGQADGGLSVLRTFRLL
RVLKLVRFLPALRRQLVVLMRTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDSGD
TVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNL
LVAILVEGFQAEGDATRSDTDEDKTSTHLEEDFDKLRDLRATEMKMYSLAVTPNGHLEGR
GSLPPPLITHTAATPMPTPKSSPHLDVAHTLLDSRRSSSGSVDPQLGDQKSLASLRSSPC
TPWGPNSAGSSRRSSWNSLGRAPSLKRRSQCGERESLLSGEGKGSTDDEAEDSRPSTGSH
PGASPEPRATPLRRAESLDHRSTLDLCPPRPAALLPTKFHDCNGQMVALPSEFFLRIDSH
KEDAAEFDDDIEDSCCFRLHKVLEPYAPQWCRSRESWALYLFPPQNRLRVSCQKVIAHKM
FDHVVLVFIFLNCITIALERPDIDPGSTERAFLSVSNYIFTAIFVVEMMVKVVALGLLWG
EHAYLQSSWNVLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPG
LKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGTDTRNITTKAECHA
AHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVQNHNPWMLLYF
ISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRKAQRRPYYA
DYSHTRRSIHSLCTSHYLDLFITFIICLNVITMSMEHYNQPKSLDEALKYCNYVFTIVFV
FEAALKLVAFGFRRFFKDRWNQLDLAIVLLSIMGIALEEIEMNAALPINPTIIRIMRVLR
IARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNP
CEGLSRHATFTNFGMAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSYLPALSPVYFV
TFVLVAQFVLVNVVVAVLMKHLEESNKEAREDAEMDAEIELEMAQGPTAQPLSTAQESQG
TQPDTPNLLVVRKVSVSRMLSLPNDSYMFRPVAPAAAPHSHPLQEVEMETYTGPVTSAHS
PPLEPRASFQVPSAASSPARVNNPLCALSPRSTPRSLSLSRILCRQEAMHSESLEGQVDD
TGEDSISDHTEPAENISMSQASMGALRSPPCSPRPASVRTRKHTFGQRCISSHPPTLGGD
DAEAADPADEEVSHITSSAHPWPATEPHSPEASPTASPTKGTVGSGRDPRRFCSVDAQSF
LDKPGRPDGQRWSSVELDNGDSHLESGEARGRAAELEPALGARRKKKMSPPCISIEPPTE
EEGSTRPPATEGGNTTLRRRTPSCEAALHRDCLESSEGPGTGGDPVAKGERWGQASCRAE
HLTVPNFAFEPLDMGGPGGDSFLDSDQSVTPEPRVSSLGAIVPLILETELCTPSGDPPEK
EQGLYLTVPQTPLKKPGSPPATPAPDDSGDEPV
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgctggtcatcatgctgaactgcgtgacactgggcatgttccggccctgtgaggatgtt
gagtgccgctcggaacgttgcagcatcttggaggcctttgatgacttcatctttgccttc
tttgctgtggagatggttatcaagatggtggctttggggctgtttggacagaaatgctac
ctgggtgacacctggaacaggctggatttcttcattgtcatggcgggcatgatggagtat
tctctggacggacacaacgtgagcctctctgccatccgaacggtgcgtgtgctgcggcct
ctccgcgccatcaacagggtccccagcatgcggatcctggtcactctgctgctggacaca
ctgcccatgcttgggaatgtccttcttctctgcttcttcgtcttcttcatcttcggcatc
gttggggtccagctctgggctggcctgctgcggaaccgatgcttcctggacagcgccttc
gtcaggaacaacaacctgaccttcctgcggccatactaccagacagaggagggcgaggag
aaccctttcatctgttcctcacgccgggacaatggcatgcagaaatgctcacacatcccc
agccgccgtgagcttcgcgtgcagtgcacactcggctgggaggcctatgggcagccacag
gctgaggatggggctgccagtcacaatgcctgtatcaactggaaccagtactacaatgtg
tgccgctcaggagaattcaaccctcacaatggtgccatcaactttgacaacattggctat
gcttggattgccatcttccaggtcatcacactggagggctgggtggacatcatgtactac
gtcatggatgcccactccttctacaacttcatctacttcattctcctcatcattgtgggc
tccttcttcatgatcaacctgtgcctggtggtgatagccacacagttctccgagacgaag
cagagggaaaaccagctgatgcgtgaacagcgggcccgctatctgtccaacgacagcact
ctggccagcttctcagagcctggcagctgctacgaggagctcctcaagtatgtaggccac
atcttccgaaaggttaaacgtcgtagcctgcgcctttatgcccgctggcagagccgctgg
cggaagaaggtggatcccagcagcaccctgcatggccaaggccctgggcggcggccacgg
cggacgggcaggcgcacagcttccgtgcaccatctggtctaccaccaccaccaccaccat
caccaccattaccacttcagccacagtggcccacgcaggcctagcccagagccaggtgct
ggtgacaccaggttggtcagggcctgtatgccaccttcaccaccatccccaggccatggg
ccaccagattctgagtctgtgcacagtatctaccatgctgactgccatgtggaggggcca
caggagagagcccgcgtggcacactccatagccactgctgctggcctcaagttggcctca
ggtttgggcaccatgaactaccccaccatcctaccttcaggaacagtcaacagcaaaggt
ggtgccagctcacgacccaaggggctgaggggtgctggcaccccaggggctacagcacac
agccctctgagcctgggaagccccagtccctatgagaagatccagcatgtggttggagaa
caaggactaggccgagcctctagccacctgtcaggcctgagtgtgccttgccccctgcct
agcccccaggctggcacgctgacctgtgagctgaagagctgcccatattgtgctagtgcc
ctagaggaccctgagtttgagttcagtggctcagagagcggggactcggatgcccacgga
gtctatgagtttacacaggacgtacggcatggggattgccgggaccctgtgcagcagccc
catgaagtggacacgccgggccatggcaatgagcggaggcggacgccactgcggacagct
tcacagccaggagggctaggccgcctctgggcttcctttagtggcaagcttcgtcgcatt
gtagacagcaagtacttcaaccgaggcatcatggcagccatccttgtcaatactctgagc
atgggcgttgagtatcatgagcagcccgacgagctgacgaacgcactggagataagcaac
atcgtgttcaccagcatgtttgccttggagatggtactgaagttgctggcctgtggccca
ctgggatacatccggaacccctacaatatcttcgatggcattgttgttgtcataagtgtc
tgggagatcgtggggcaggcagatggtggcctgtctgtgctccggacgttccggctgctg
cgggtgctgaagctggtgcgcttcctgccggcactgcggcggcagctggtggtgctcatg
aggaccatggacaacgtggccaccttctgcatgctgctcatgctcttcatcttcatcttc
agcatcctgggcatgcacctgtttggctgtaagttcagcctgaagacagactctggagac
accgtccctgacaggaagaacttcgactccctactgtgggccatcgtcactgtgtttcag
atcttgacacaagaagactggaacgtggttctttacaatggtatggcttccacctcgtcc
tgggctgccctctactttgtagccctcatgacctttgggaactacgtgctcttcaacctg
ctggtagccatcctggtggaaggcttccaggcagagggtgatgccaccagatctgacacc
gatgaggataagacatccacccacctagaagaagattttgataagctcagagatcttcga
gccacagagatgaagatgtactcactggctgtgacccctaatgggcacctagagggccga
ggcagcctgccgccgcctctcatcacacacacagcggctacgcctatgcctacccccaag
agctccccgcacctggatgtggcccatactctcctggactcacggcgtagcagcagcggc
tctgtggacccccaactgggggaccagaagtctctggccagcctccgcagctccccttgc
accccatggggccccaacagtgctgggagtagccggcgctccagttggaacagcctgggc
cgtgcacccagccttaaacgccgcagccagtgtggggagcgcgagtccctgctctccggt
gaggggaagggcagcacagatgatgaggccgaggacagcagaccaagcacggggtcccac
ccaggggcctcgcctgagccccgagccacgccgctgcggcgcgccgagtcgttggaccac
cgcagcacgctggacttgtgtcccccacggcctgccgccctcctgcccaccaagttccat
gactgcaacgggcagatggtggccctgcccagcgagttctttctgcgcattgacagccac
aaggaggacgcagcggagtttgacgatgacatagaggatagctgctgcttccgcctgcac
aaagtgctggaaccctatgcgccccagtggtgccgcagccgggagtcctgggccctgtat
ctcttcccgccacagaacaggctccgcgtctcctgccagaaagtcatcgcacacaagatg
tttgaccatgtggttcttgtcttcatcttcctcaactgtatcaccattgccctggagaga
ccagacattgaccctggcagcactgagcgggccttcctcagcgtctccaactacatcttc
acagcaatcttcgtggtggagatgatggtgaaggtagtagccttgggactgctgtggggt
gagcatgcctacctgcagagcagctggaatgtgctggatgggctgcttgtcctggtgtcc
ctggttgacatcgtcgtggccatggcctccgctggtggtgccaagatcctaggcgtcctg
cgtgtgctgcgcctgctgcggacactgaggcctctgagggtcatcagccgagctccgggc
ctcaagctggttgtagagactctgatatcatcgctcaggcccattgggaacatcgtcctc
atctgctgcgccttcttcattatctttggcatcctcggggtgcagcttttcaagggcaaa
ttctactactgcgagggcacagataccaggaatatcaccaccaaggccgagtgccatgct
gcccactaccgctgggtgagacgcaaatacaactttgacaacctgggtcaggcgctgatg
tctctgtttgtgctgtcatccaaggacggctgggtaaacatcatgtacgacgggctggac
gctgtgggcattgaccagcagcccgtgcagaaccacaacccctggatgctgctctacttc
atctccttcctgctcatcgtcagcttcttcgtgctcaacatgtttgtgggcgtggtggtg
gagaacttccacaagtgcaggcagcaccaggaggctgaggaggcacggcgccgggaggag
aaacgcctgcggcgcctggagaggaggcgcaggaaggcccagcgccgaccctactacgca
gactattcacacacacgccgctccatccattcgctgtgcaccagccactacctggacctc
ttcataaccttcatcatctgcctcaacgtcatcaccatgtccatggagcactacaaccag
cccaagtctctggacgaggccctcaagtactgcaactacgtcttcaccattgtcttcgtc
tttgaggctgcactgaagctggtggcctttgggttccgaaggttcttcaaggacaggtgg
aaccagctggacttggccattgtcctcctgtccatcatgggcattgcgctggaggagatt
gagatgaacgctgcccttcccatcaatcccaccatcatccgcatcatgcgcgtgcttcgt
atcgcccgtgtgctgaagctactgaagatggccacaggcatgcgtgccctgctggatact
gtagttcaagctctgcctcaggtagggaaccttggtcttcttttcatgctcctgtttttt
atctatgctgccctgggagtggagctgtttgggaggctagaatgcagtgaggataacccc
tgtgagggcctgagcaggcacgcgaccttcaccaactttggcatggccttcctcacgttg
ttccgagtgtccactggggacaactggaatgggatcatgaaggatactctgcgtgagtgt
acccgtgaggacaagcactgcctgagctacctgccggcgctctcacctgtctactttgtc
accttcgtgctggtcgcccagttcgtgctggtcaatgtggtggtggcggtactcatgaag
catctggaggagagcaacaaggaggcccgcgaggatgcggagatggatgccgagatcgag
ctggagatggcacaggggcccacagcccagcctctgtctacagcacaggaaagccaaggt
acccagccagacaccccgaacctcctggttgtgcgcaaagtatctgtgtccaggatgctg
tcgctgcccaatgacagctacatgttccggccggtagctcccgcggctgccccacattcc
cacccactgcaggaagtggagatggagacctacacaggcccggtcacctctgctcactcg
ccacccctggagccccgagcctccttccaggtcccatcagctgcatcctccccagccagg
gtcaacaaccccctttgtgccctttcaccccggagtacaccccgttctctgagcctctca
cggatactctgcagacaggaggccatgcactccgagtccctggaagggcaggttgatgac
actggggaagacagcatctcagaccacacagaacctgctgagaatatttccatgagccag
gcatcaatgggtgctctgcggtcccctccgtgctccccacgacctgccagtgtccgtacc
cgcaagcacacttttgggcagcgctgcatctccagccaccctcccaccctgggaggggac
gatgctgaagcagcagacccagcagacgaggaggtcagccacatcaccagctcagcccac
ccctggccggctacagagccccatagcccagaggcctccccaacagcctctcctacgaaa
ggcacagtgggcagtgggcgggacccacgcaggttctgcagtgtagatgctcagagcttc
ctggacaaaccaggtcggccagatggacagcggtggtcctcggtggaactggataatgga
gacagccacctagagtctggagaagcgaggggccgggctgcagagctcgagccggctctt
ggggcgcgaaggaagaagaagatgagtcctccctgcatctccattgaacctccgactgag
gaggagggctctacccggccccctgcaactgaaggaggcaacactaccctgaggcgccga
accccgtcctgtgaggctgccctccacagggactgcctagagtcttcagagggcccaggc
actggaggtgaccctgtagccaagggcgagcgctggggtcaagcctcttgccgggcagag
catctgactgtccccaactttgcctttgagcctctggacatgggtggacctggtggagac
tcttttttggacagtgaccaaagtgtgactccagaacccagagtttcctctttgggggct
atagtgcctctaatactagaaactgaactttgtacgccctctggtgaccccccagagaag
gagcaaggactgtacctcactgtgccccagacccccttgaagaaaccagggtctccccca
gccactcctgccccagatgacagtggagatgagcctgtgtag
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