Arvicanthis niloticus (African grass rat): 117710459
Help
Entry
117710459 CDS
T08817
Symbol
Top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03440
Homologous recombination
anu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117710459 (Top3a)
03460 Fanconi anemia pathway
117710459 (Top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anu03032
]
117710459 (Top3a)
03400 DNA repair and recombination proteins [BR:
anu03400
]
117710459 (Top3a)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
117710459 (Top3a)
DNA replication proteins [BR:
anu03032
]
Eukaryotic type
DNA Topoisomerases
117710459 (Top3a)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
117710459 (Top3a)
FA (Fanconi anemia) pathway
117710459 (Top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
117710459
NCBI-ProteinID:
XP_034361147
LinkDB
All DBs
Position
6:60793688..60831897
Genome browser
AA seq
1003 aa
AA seq
DB search
MIFPVTLLAFQWQRRPGGRALSRAAMEVVFRGVRKVLCVAEKNDAAKGIADLLSNGRMRR
KEGLSKFNKIYEFDYRLYGQNVTMIMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK
YCPENFVDIKKTLERETQHCQALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSE
ITPHAVRAACENLTDPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRVFPEALAQQLIS
YGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVTHDHKDGTVEFNWKRYRLFNHTACLVLY
QLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI
SYPRTETNIFPKDLNLVALVEQQTLDPHWGAFAQNILERGGPTPRNGSKSDQAHPPIHPT
KYTSSLQGDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDV
YPYDHWSDKLLPVYEQGFRFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAE
HIETIKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKK
DKFQVLRQQVQKYKQVFIEAVAKAAKLDEALSQYLGERTEVAQQEEIYPALPEPVRKCPQ
CNKDMVLKTKKSGGFYLSCTGFPECRTAVWFPDSVLEASRDNSVCSVCQPSPVYRLKLKF
KRGSLPPTMPLEFVGCIGGCDETLKEIFSLRFSQAPPRASQPSGHLQASQALNRMDSSQH
SLSQPLVNRHTGPSKAVAQTLLPPTAAGESNSVTCNCGQEAVLLTVRKQGPNQGRHFYKC
SGGNCSFFLWADGSHPTGGGPPTSAPRPPGNSVGCTSGLGSHMDGFGSLGGDSDGGTSCL
CGQPAVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENVAPGSFAAPAWPGGRGKAQ
RPEAASKRQRAGSLDAGSTVKKPRKCSLCHQPGHTRPFCPQNR
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcccggtcaccctcttagcgtttcagtggcagcgaaggcctggaggccgtgcc
ctgtcccgcgctgccatggaagtggtcttccgaggagtgcgaaaagttctctgcgtggcg
gagaaaaacgacgctgccaagggaatcgccgacttgctgtccaacggtcgtatgaggcgg
aaagaaggcctttctaaattcaacaagatttatgaatttgactatcgtctgtatggccag
aatgttactatgataatgacttctgtctctggacatttgctggctcatgacttccagatg
cagtttcggaaatggcagagctgtaatcccctagtcctctttgaagcagaaattgaaaag
tattgcccagaaaactttgtagacatcaagaaaactcttgaacgagagacacagcattgt
caggcattggtgatctggactgactgtgacagagaaggtgaaaacatcgggtttgagatc
atccatgtatgcaaggctgtaaagcccaatctacaggtgctgagagcccgcttctctgag
atcacgccacatgccgttagggcagcctgtgaaaacttaactgatcccgaccagagagta
agtgatgcagtggacgtgaggcaagagctggatctgaggatcggagctgccttcacgagg
ttccaaaccctgcggctccagagggttttccctgaggcactggcacagcagctcatcagc
tatggcagctgccagttcccaacactggggtttgtggtggagaggttcaaggccattcag
gcttttgtgccggaagtcttccacagaattaaagtaactcatgaccacaaagatgggacc
gtagagttcaactggaaaagataccgtctttttaaccacacagcttgtcttgtcctctat
cagttgtgtatggaggatcccatggcaaccgtggtagaggtcaggtctaagccaaagagc
aagtggaggcctcaagcgttggacactgtggagctagagaaactggcgtctcggaaattg
agaataaatgccaaagaaaccatgaggattgcagaaaagctctatacacaagggtacatc
agctacccccggacagaaacaaacatcttccccaaagacttaaacctggttgcattggtg
gaacagcagactctggatccacactggggggcttttgctcagaacattctagagcgaggt
ggccccactccacgaaatgggagcaaatctgatcaagctcaccctcccattcaccccacc
aaatacaccagcagcttgcagggagacgatcggcgactgtacgagttcattgttcgccat
ttcctggcttgctgctctcaggatgctcaggggcaagagactaccgtggagattgacatt
gcccaggagcgctttgtagcccacggcctcataattctggcccgtaactacctagatgtg
tatccgtatgatcactggagtgacaagctcctgcctgtctatgagcaaggcttccgcttt
cagcccagcactgtggaaatggtggatggggaaactagcccaccccaactgcttactgaa
gctgacctcatcgccctcatggagaaacatggtatcggtactgatgcaactcacgcagag
cacattgagaccatcaaagcccggatgtatgtgggactcacctcagacaagcggtttctg
ccggggcacctaggcatgggacttgtggaaggttacgattccatgggttatgagatgtcc
aagcctgacctccgtgccgagctggaagctgatctcaagctgatctgtgagggcaagaag
gataagtttcaggttctaaggcagcaagtgcagaaatacaagcaggttttcattgaagca
gtggcgaaggcagcgaagttggatgaggccttatctcagtacttaggagaaaggacagag
gtagcccagcaagaagagatctacccagccttgccagagcctgttcggaagtgcccacag
tgtaacaaggatatggtcctcaagaccaagaagagtggtgggttctaccttagctgcaca
gggttcccagaatgtcggacagctgtgtggtttcctgactctgtgttggaagccagcagg
gacaacagtgtgtgttcggtttgtcagccatcccctgtgtacaggttgaagctgaagttt
aagcgaggtagccttcccccaactatgcccctggagtttgtcggctgcatcggtggatgt
gacgagactttgaaggaaatcttcagcctgcgattttcacaggctcccccacgggcgagc
cagccctctggccacctgcaggccagccaggccctcaacaggatggacagcagtcagcat
agcctgtctcaacctctggttaacagacatactggaccttcaaaggcagtggcccaaacc
ttgctaccacccactgctgctggtgaaagcaactctgtgacctgcaattgtggccaggag
gctgtactgctcactgtccgcaagcagggccccaaccagggccggcacttctataagtgc
agtggtggcaattgcagcttcttcctgtgggctgacggcagccatcccactggaggaggg
ccccccacctctgcaccgagacctccaggaaactctgtaggatgcacatcaggcttaggc
agccacatggatgggtttggcagccttggtggtgacagtgatggaggtacatcctgccta
tgcgggcagcctgctgtcacacggactgtacaaaaggatggacccaacaaaggacgccag
ttccacacctgtgccaagccacgagagcagcagtgtggcttctttcagtgggtggatgag
aacgtggccccagggagttttgcagccccagcatggccaggaggcagagggaaagcccag
agaccagaggctgcaagcaaaagacaaagagctggttccttagatgcagggtctacagta
aaaaagcctcgaaagtgtagcctctgccaccagcctggacacacccggcccttttgtcct
cagaacagatga
DBGET
integrated database retrieval system
