Arvicanthis niloticus (African grass rat): 117710834
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Entry
117710834 CDS
T08817
Symbol
Casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117710834 (Casc3)
09122 Translation
03013 Nucleocytoplasmic transport
117710834 (Casc3)
03015 mRNA surveillance pathway
117710834 (Casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117710834 (Casc3)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117710834 (Casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
117710834
NCBI-ProteinID:
XP_034361978
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Position
6:complement(23633741..23657408)
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AA seq
699 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASGSDSGSPARGGGSCSGSAGGGGSGSLPSQRGGRGGGLHL
RRVESGGAKSAEESECESEDGMEGDAVLSDYESAEDSEGEEEYSEEENSKVELKSEANDA
ADSSTKEKGEEKPESKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGDRSSKSHRHQGPGGNLPPRTFINRNAAG
TGRMSASRNYSRSGGFKEGRTSFRPVEVGGQHGGRSGETLKHEANYRSRRLEQTPMRDPS
PEPDAPLLGSPEKEEVASETPAAVPDITPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEE
VPAPSEGLTSAATVPETTPPAAKTGNWEAPVDSSTGGLEQDVAQLNIAEQNWSPGQPSFL
QPRELRGMPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRPVPEPPAPPVHISIME
GHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQSPAPLPNPGLYPPPV
SMSPGQPPPQQLLAPAYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGV
TYYNPAQQQVQPKPSPPRRTPQPVSIKPPPPEVVSRGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcccaggacactgaggacgaagaatctggtgct
tcgggttccgacagcggctctccggcgcggggcggcggcagctgcagcgggagcgccggc
ggcggcggcagtggctcgctgccttctcagcgcggcggccgcggcgggggccttcatctg
cggcgggtggagagcgggggcgccaagagcgcagaggagtctgaatgtgagagtgaagat
ggcatggaaggagatgctgttctttccgattacgaaagtgcagaagattcagaaggtgaa
gaagaatacagtgaagaggagaattccaaggtggagctgaaatcagaagctaatgatgct
gctgattcctctacaaaagagaagggagaagaaaagcctgaatctaaaggcactgtgact
ggggagaggcagagtggggatggacaggagagcacagagcccgtggagaacaaagtgggt
aaaaaaggccctaagcatttggatgacgatgaagatcggaaaaatccagcgtatattccc
aggaaagggctcttctttgagcatgatcttcgaggacagactcaggaggaggaagttcga
cccaaaggacgacagcgaaagctatggaaagacgagggtcgctgggagcatgataagttt
cgtgaggatgaacaggctccgaaatctcgacaggagttaattgcactttatggctatgac
attcggtctgctcacaatcctgatgacatcaaaccccgaagaatccggaaacctcgattt
ggaagtcccccacaaagagatccaaactggattggtgatcgatcaagcaaatcccatcgc
caccagggtcctgggggcaacctaccacctaggacatttattaacaggaatgcagcaggt
actggccgcatgtctgcatccagaaattattctcgatctgggggcttcaaggaaggtcgt
actagttttaggcctgtggaggttggtgggcagcatggtggccggtctggtgagactctt
aagcatgaagctaattaccggtcacggcgtctggagcagactcctatgagggatccatct
ccagaaccagatgctccattgcttggaagtcctgagaaagaagaggtggcctcagagaca
ccagctgctgtacctgatatcacaccaccagctcctgacaggcccattgagaagaaatct
tattctcgggcaagaaggaccaggaccaaagtcggggatgcagtcaaagctgctgaggag
gttcctgctccatctgaagggcttacttcagcagccacagttccagaaactactcctcca
gctgctaagactgggaactgggaggctccagtagattcttccacaggtggacttgagcaa
gatgtggcccagctaaatatagcagaacaaaattggagtccaggacagccttcattcctg
cagccacgggaacttcgaggtatgcctaaccacatccatatgggagcaggacctccacct
cagtttaaccggatggaagaaatgggtgtccagagtgggcgagctaagcgttattcatcg
cagcggcagagacctgtgccagagccccctgctcctcctgtgcatatcagcatcatggag
gggcattactatgacccattgcagttccagggaccaatctatacccatggtgacagccct
gccccactgcccccacagggcatgattgtacagccagaaatgcatcttcctcacccaggt
ttacacccccaccagtcaccagcacctctgcccaatccgggtctctacccaccaccagtg
tccatgtccccaggacagccaccgccccagcagttgcttgctcctgcctacttttctgct
ccaggtgtcatgaattttggtaaccccagttacccttatgctccgggagcattgcctcct
cctccacctcctcatctgtatcctaacacacaggctccatcacaggtgtatggaggagtg
acttactataaccctgcccagcagcaggtgcagccaaagccctccccaccccggaggact
ccccagccagtctccatcaagccccctccacctgaggttgtaagcaggggttccagttaa
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