Arvicanthis niloticus (African grass rat): 117711019
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Entry
117711019 CDS
T08817
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03030
DNA replication
anu03420
Nucleotide excision repair
anu03430
Mismatch repair
anu03440
Homologous recombination
anu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117711019 (Rpa1)
03420 Nucleotide excision repair
117711019 (Rpa1)
03430 Mismatch repair
117711019 (Rpa1)
03440 Homologous recombination
117711019 (Rpa1)
03460 Fanconi anemia pathway
117711019 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117711019 (Rpa1)
03032 DNA replication proteins [BR:
anu03032
]
117711019 (Rpa1)
03400 DNA repair and recombination proteins [BR:
anu03400
]
117711019 (Rpa1)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117711019 (Rpa1)
DNA replication proteins [BR:
anu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117711019 (Rpa1)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117711019 (Rpa1)
MMR (mismatch excision repair)
117711019 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117711019 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
117711019
NCBI-ProteinID:
XP_034362284
LinkDB
All DBs
Position
6:46456567..46503811
Genome browser
AA seq
615 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPVLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNTLVEGGKLASNCVCQVHRFIVNTLKDGRRVVILMDLEVVKSAEDVGLKIGNPVPYNE
GYGQQQQAAPSPASTVTPPASKPQPQNGSLGMGSTVAKAYGASKPFGKPAGTGLLQPSGG
TQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFN
EQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQ
FDFTGIGDLESKSKDSLVDIIGICKSYEDSTKITVKSNNREVAKRNIYLMDMSGKVVTAT
LWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEG
QALDGVSISDLRSGGAGGNNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQ
ACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAI
LGQNTVYLGELKEKNEQAFEEVFQNANFRSFTFKIRVKLETYNDESRIKATVMDVKPVDY
RDYSRRLIMNIRKNI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccatcgcggccataatgcagcagggagatacatcc
ataaagcccgtccttcaagtcattaacatccgacccattactacagggaatagtccaccc
cggtaccgactgcttatgagtgatgggttgaacacgctttcctctttcatgctggccaca
cagctgaacaccctggtggagggggggaagctggccagcaactgtgtctgccaggtccac
cggttcatcgttaacaccctgaaagacggaaggagagtagttattttgatggacttggaa
gttgtgaaatctgctgaagacgttggattaaagattgggaatccagtgccctataatgaa
ggatatgggcaacagcagcaagcagccccttccccagcctccacagtgacaccaccagcc
agcaagccccagccgcagaatgggagcttgggaatgggttccactgtggctaaggcttat
ggtgcctcaaagccatttggaaaacctgctggaactggcctgctgcagccgtcaggtggg
acacagtctaaagtggtgcccatcgccagcctcaccccttaccaatccaagtggactatt
tgtgcccgtgtcaccaacaaaagtcagatccgcacctggagcaattcccggggggaagga
aagcttttctctatagaacttgtggatgaaagtggtgagatcagagctacagctttcaac
gaacaggtggacaagttcttcccccttattgaagtgaacaaggtgtattacttctcaaag
ggcactctgaagatcgctaacaaacaattctcagctgttaaaaatgactatgagatgacc
ttcaataatgagacctctgtccttccctgtgaagatggccatcacttacccacagttcag
tttgatttcacagggattggtgacctagagagcaagtctaaagactcacttgtagacata
attggaatctgcaagagctatgaagattcaactaaaatcaccgtgaagtctaacaacaga
gaggttgctaagagaaatatctatttgatggacatgtcagggaaagtggtgactgcaact
ctgtggggagaagatgctgacaaatttgacggttctaggcagcctgtgatggccatcaaa
ggcgcccgagtttctgactttggtggacggagcctctcagtcctatcctctagcactgtc
attatgaatcctgacatcccagaggcctataagctccgtggatggtttgactcagaagga
caagccttagatggagtatccatctctgacctcaggagtggaggggccggcgggaacaac
accaactggaaaaccttgtatgaagctaagtcagagaacctgggccagggcgacaaggcg
gactatttcagcactgtggcaacggtggtgtttcttcgcaaagaaaactgtatgtaccag
gcctgcccaacccaggactgcaataagaaagtgattgaccagcagaatgggttgtaccgc
tgtgagaagtgtgaccgggaatttcccaatttcaaataccgcatgatcttatcggcaaat
attgcagattttcaggagaaccagtgggtgacatgtttccaagagtctgcggaggccatc
cttggacagaacactgtgtaccttggggaactcaaagagaagaacgagcaggcatttgaa
gaggttttccagaatgccaactttcgatcatttacattcaaaatcagggtcaagctggag
acctacaatgatgaatctcgaattaaggccactgtgatggacgtgaagcccgtggactac
agagactacagcagaaggctgatcatgaacatcaggaagaacatttga
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