Arvicanthis niloticus (African grass rat): 117711172
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Entry
117711172 CDS
T08817
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04612
Antigen processing and presentation
anu05145
Toxoplasmosis
anu05152
Tuberculosis
anu05164
Influenza A
anu05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
117711172 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
117711172 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
117711172 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
117711172 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
117711172 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
anu01001
]
117711172 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
anu04054
]
117711172 (Ciita)
Enzymes [BR:
anu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117711172 (Ciita)
Protein kinases [BR:
anu01001
]
Serine/threonine kinases: Other
TAF1 family
117711172 (Ciita)
Pattern recognition receptors [BR:
anu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117711172 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_14
LRR_4
LRR_8
LRR_9
AAA_16
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
117711172
NCBI-ProteinID:
XP_034362529
LinkDB
All DBs
Position
6:99880655..99924651
Genome browser
AA seq
1156 aa
AA seq
DB search
MNHFHAILAQVQTLLSSQQPRQVRALLDGLLEEQLLSREYHCALLREPDGEALARKISLT
LLEKGDLDLAFLSWVCNSLQAPTVERGTSYRDHGGHSLCATMELGSPEGSYLELLNSDVD
PLHLYRLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMEMDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFGENIEVPVEAGQKPQKRRFPEEHDMDSKHRKLVP
PSRTSLNYSDLPAGHIQIFTTLPQGLWQISGPSTGLSSFLIYHGEMPQVNQVLPSSSPTV
PSLPESPDRPGSASPFAPSTADLPSMPEPALTCRVNETEDTTSPSPCQEGPESSIEFPKW
PESVEQFQHSLQDKYQALSESPSGPLVPMELVRARLERGSNKSQERELATPDWTERQLAH
GGLAEVLQVVGDCRRPRETQVVAVLGKAGQGKSHWARTVSYTWARGQLPQYDFVFYVPCH
CLDCPGGTYHLRDLLCPPSLQPLAMDDEVFDYIVRQPDRVLLILDAFEELEAQDGLLHGP
CGPLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQA
QTYMRHYFENSGMAGNQDKALGLLEVQPFLLTHSHSPVLCSAVCQLSKALLEQDTEAQLP
CTLTGLYVGLLGPAAQNSPPGALVQLARLAWELGRRHQSTLQETQFPSVEVKTWAVTQGL
MQPTLGTTETQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGV
PRFLAGLVFQPRAHCLGALVEPAVAAVADRKRKVLTRYLKRLKLGTLRAGRLLELLHCAH
ETQEPGIWEYVTHQLPGYLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGIEPSGLG
NLVGLSCVTSFRASLSDTMALWESLQQQGELQLLQTAEKKFTIEPFKAKSPKDVEDLDSL
VQTQRLRNPSEDAAKDLPAIRDLKKLEFALGPVLGPQVFPTLAKVLPAFSSLQHLDLDSL
SENKIGDKGVSKLSATFPQLKALETLNLSQNSITDVGACKLAEALPALAKSLVRLSLYNN
CICDTGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPF
GVQEHLQQLDARISLR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccacgccatcctggcccaggtacagaccctgctctccagccagcagccc
cggcaggtgcgagccctcttggacggcctgctggaagaacagctcctctcacgggaatac
cactgtgccctgctccgggagcctgatggtgaggctctggccaggaagatttccctgacc
ctgctggagaaaggggacttagacttggctttcttgagttgggtctgcaacagtctgcag
gcccccacggtagagaggggtaccagctacagggaccatggaggccatagtctgtgtgcc
accatggaactggggtctccggagggcagctacttggagctccttaacagtgacgtcgac
cccctacacctctatcgcctctatgaccagatggacctggctggggaggaggagattgaa
ctcagctcagagccagacacggacaccatcaactgcgaccagttcagcaagctgttgcag
gacatggaaatggatgaggagacccgggaggcctatgccaacatcgcggaactggatcag
tacgtgttccaggatacccagctggagggcctgagcaaggacctcttcatagagcacatt
ggagcagaggaaggctttggtgagaacatagaggtccctgtagaagcaggacagaagcct
cagaagagacgcttcccagaagagcatgatatggactcaaagcacaggaagctagtgcct
ccctctaggacctcactgaactattcggatctccccgctgggcacatccagatcttcacc
actctgccccaaggactctggcaaatctcagggcctagcacagggctctccagttttcta
atctaccacggtgagatgccccaggtcaaccaagtactcccttcaagcagccccactgtc
cccagtctccccgagtccccagataggcctggctctgccagccccttcgcaccgtccaca
gctgacctgcccagcatgcctgaacctgcactgacctgccgtgtaaatgagacagaggac
acaacatccccctctccatgccaagagggtcccgagtcttccatcgagtttccaaaatgg
ccagagtctgtggagcagttccagcactccctacaggacaagtaccaggcactgtccgag
agcccaagtggtcctctggtgcccatggagttggtgcgagccaggttggaaagaggcagc
aacaaaagtcaggaaagggagctggccactccagactggacagagcgccagctagcccat
ggtggtctggctgaggtacttcaggttgtcggtgactgcaggcgaccacgagagacacag
gtggtcgctgtgctgggcaaggctggccagggcaagagccactgggccaggacagtgagt
tacacctgggcacgtggccagttgccacaatatgactttgtcttctatgtcccctgtcat
tgcttggattgtcccgggggcacctaccacctacgggatctgctctgtcccccaagcctg
cagccgctggccatggatgacgaggtctttgattatattgtgaggcagccggaccgcgtt
ctgctcattctagatgcttttgaggagctagaggcccaagatggcctcctgcatggaccc
tgtggacctctgtccccagagccctgctccctccggggactgctggctgggatattccag
aggaagcttctgcgaggctgcaccctgctcctcacagcccggccccggggccgcctggct
cagagcctgagcaaggcagatgccatctttgaggtgcccagcttctctactaaacaggcc
cagacttacatgagacactactttgagaactcagggatggcagggaatcaagacaaggcc
ctgggcctcctggaggtccagccttttctcctcacccatagtcacagccctgttctgtgc
agtgctgtgtgccagctctccaaggccctgctggaacaggacacagaggcccagctacct
tgtacacttacgggactctatgttggcctgctaggccctgcagctcagaacagtcctcct
ggagccttagttcagctggccaggctggcctgggagctaggacgaagacaccaaagcacc
ttgcaagaaacccagtttccgtcagtggaggtgaaaacctgggcagtgacacaaggcttg
atgcagccaaccctggggaccacagagacccaactggccttctccagttttctgcttcag
tgtttcctgggtgctgtgtggctggcacagtgcaatgaaatcaaagacaaggagctgcca
cagtacctggccttgaccccgaggaagaagagaccttatgacaactggctggagggggta
ccacgctttctggctggattggttttccagcctcgtgcccactgtctgggagctctggtg
gagcctgcagtggctgcagtggcggacaggaaacggaaggttcttaccaggtacctgaag
cgcctgaagctggggacacttcgggctggcaggttgctggagctactacactgcgcccat
gaaacacaggaacctggtatttgggagtatgttacacaccagctccctgggtacctctcc
ttcctgggcactcggctcacccctccagatgtgtatgtattgggcagggcattggagaca
gccagccaggacttctccttggaccttcgtcagactggcattgagccctctggactggga
aacctcgtgggactcagctgtgtcaccagtttcagggcctccttgagtgatacaatggca
ttatgggagtccctacagcagcagggagaactccagctactccagacagcagagaaaaag
ttcaccattgaaccatttaaggccaaatccccaaaggatgtggaagacctggacagcctc
gtgcagacccaaaggctgagaaacccctcagaagatgcagctaaggatcttcctgccatc
cgggacctgaagaagctagagtttgcgttgggccctgtcttgggccctcaggttttcccc
acactggcaaaggtcctcccagccttttcttcgctgcagcacctggacctggactctctg
agtgagaacaagatcggggacaagggtgtatcgaagctctcagccaccttccctcagctg
aaggccctggagacactcaacctgtcccaaaacagcatcactgatgtgggtgcttgcaag
cttgcagaagccctgcctgccctagccaagtctctcgtaaggctgagcttgtacaataac
tgcatctgtgacacaggagccaagagcctggcacaagtacttccggacatggtgtccctg
cgggtgatggatgtccagttcaacaagttcacggcagctggtgcccagcagctggcctcc
agccttcagaagtgccctcaggtggaaacactggcaatgtggacacccactatccccttt
ggggttcaggaacacctgcagcagctggatgcccggatcagcctgagatga
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