Arvicanthis niloticus (African grass rat): 117711235
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Entry
117711235 CDS
T08817
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117711235 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117711235 (Lig3)
Enzymes [BR:
anu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117711235 (Lig3)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
117711235 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
117711235
NCBI-ProteinID:
XP_034362637
LinkDB
All DBs
Position
6:complement(39171154..39194347)
Genome browser
AA seq
1013 aa
AA seq
DB search
MTLAFKILFPRNLCALGRKELCLFPEQNRWAAIRQFSQWSETNLLCGFCLLQRRKPVLSF
QRGHLRTLATHFIFWPGSHVGLCTGPCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKAAATPKKKAAVQAKLTTTGQVTSPVKGASIITSTNPRKFSGFSAKPNNSEQS
PSSPAPRTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHNFLQKGSTGDGF
RGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERILHNEQEVEKDPGRRRALSVQASLMT
PVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKVA
HFKDYIPKAFPGGQSMILDSEVLLIDNSTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPD
SQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKA
AVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADFT
VVAGDEESSTPGGSSGENEGTAGSAVPRKGPKAPPNKSSTSAKTEQKLNDPSNRGGNKLI
PKPSPMKPGEKLAVKSSPVKVGMKRKATDETPCLTKVLMDVFTGVRLYLPPSTPDFRRLK
RYFVAFDGDLVQEFDMASATHVLGNKDKNTDAQLVSSEWIWACIRKRRLIAPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccaagaaacctttgtgcccttggcagaaaagaa
ctgtgcttgttcccagaacagaatcgttgggctgccataagacagttcagccagtggtcg
gaaacaaatctcctttgtggattctgcctcctccagagaagaaagcctgtcctatctttc
cagagaggtcatctaagaacacttgccacccactttattttctggccaggttcgcatgtg
ggactctgtactggcccctgtgcgatggcggagcagcgcttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggtgtgtgccgcatt
ggcaaagtggttcctaatcccttctcagagtccgggggggacatgaaagagtggtaccac
attaagtgcatgtttgagaaactggaacgggcacgggccaccacaaaaaaaattgaagac
ctcaccgagctggaaggctgggaagagctggaagataacgaaaaggaacagataagccag
cacattgccgacctgtcttctaaggcagctgccacacctaagaagaaagctgctgtccag
gctaagctgacaaccactggccaggtgacatctccagtgaaaggtgcttcgattattacc
agtaccaatccccggaaattctctggcttttcagccaaacccaacaactctgaacaatcc
ccttcaagccctgctcctaggacgagtctgtctgcaagtaaatgtgaccctaagcacaaa
gactgtctgctacgagaattccgaaagctgtgtgccatggtggctgaaaatcctagctat
aacaccaagacccagatcatccacaacttcttgcagaaaggttccacaggagatggcttc
cgcggtgatgtgtacctaacagtgaagctgctgctgcctggtgtcatcaagagtgtttac
aacttaaatgataagcagattgtgaaactgtttagccgaatttttaactgcaacccagat
gatatggcccgggacctagaacagggtgacgtgtcagagacgatcagagtcttctttgag
cagagcaagtcttttcccccagctgccaaaagcctcctcaccatccaggaagtagatgca
ttcctcctgcatctctccaagctcaccaaagaggatgagcagcagcaggccctgcaggac
attgcctccaggtgtacagccaatgacctcaaatgcattatccggctgatcaaacatgat
ctgaagatgaacgcgggtgcaaaacatgtgttagatgcccttgaccctaatgcttatgaa
gccttcaaagcatcacgcaacctgcaggatgtggtggagcggatccttcacaacgagcag
gaggtggaaaaggacccaggccggcggcgggctctgagcgtccaggcctcactgatgaca
cctgtgcagcccatgctggctgaggcctgcaagtccatcgagtatgcaatgaagaagtgt
cccaatggcatgttctctgagatcaagtacgatggtgaacgagtccaggtgcataagaag
ggggaccacttcagctacttcagccgtagtctcaagcctgtcctgcctcataaggtagcc
cacttcaaggactatattcccaaagcttttcctgggggtcaaagcatgatcttggactcc
gaggtgctcttgattgacaacagcacaggcaaaccactgccctttggaactctaggagtg
cacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatctac
tttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcatgac
aacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaagct
tcagacctggctgacatgataaaccgggtgatccgagagggcttggaagggttggtgcta
aaggatgtgaagggtacatatgagcctgggaagcggcactggctgaaagttaagaaagat
tatttgaacgagggggccatggccgatactgctgatctggtggttcttggggccttctat
gggcaagggagcaaaggtggaatgatgtccatcttcctcatgggctgctatgaccctgac
agccagaagtggtgcactgtcaccaaatgtgctggaggccatgatgatgccacacttgcc
cgcctgcagaaagagctagatatggtgaagatcagcaaggatcctagcaagatacccagc
tggctgaagatcaacaagatctactaccccgacttcatcgtcccagacccaaagaaagct
gctgtgtgggagatcacaggggcagaattctccagatctgaggcacacactgctgatggg
atctccatccgatttcctcgatgcacccgaatccgggatgacaaagactggaaatctgcc
actaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttcact
gtggtggctggagatgaggagagctccactcctggaggtagcagtggtgagaatgagggc
actgctgggtctgctgtgccccgcaagggccccaaggccccccccaataagtcctctacc
agtgccaagactgaacagaagctgaatgaccccagtaacagaggtggcaacaaactgatt
ccgaagccttcccccatgaaaccaggagagaagctggctgtgaagtcttctccagtcaaa
gtgggaatgaagaggaaagctactgatgagacaccgtgcctgacaaaggtgctgatggat
gtcttcactggggtgcggctctatttgccaccttctacaccagacttcagacggctcaaa
cgctactttgtggcattcgacggggacctggtacaggaatttgacatggcctcagccaca
cacgtgctaggtaacaaggacaagaacactgatgcccagttggtctcctcagagtggatt
tgggcatgtatccggaaacggaggctgatagctccttgctag
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