Arvicanthis niloticus (African grass rat): 117711301
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Entry
117711301 CDS
T08817
Symbol
Tnrc6c
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117711301 (Tnrc6c)
03036 Chromosome and associated proteins [BR:
anu03036
]
117711301 (Tnrc6c)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117711301 (Tnrc6c)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117711301 (Tnrc6c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117711301
NCBI-ProteinID:
XP_034362752
LinkDB
All DBs
Position
6:complement(4691888..4795137)
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AA seq
1898 aa
AA seq
DB search
MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNG
KRASACGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGSLTSVSPAQASGPVGASP
PPLPGAGAQQHPSKLQPDLGHSGLADHYENSHWGQHPSYRSEANCSWDKVIIDRTDPEVW
PSIPVTETDSASECPTDTDSASNCGSENRSMATGSTQSSFPGHPKKTNGSHGTNGALVQS
PSNQSALGAGGANGNGGVARVWGVATGSSSGLAHCSVGGGDGKMDNMIGDGRSQNCWGAS
NSNAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNMGSQNGNPVGTLGA
WGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGNG
DTVNSALSAKQNGSNSAVQKEGNGGNAWDSGPPAGPGILAWGRGSGNNGIGNIHSGAWGH
PSRSSSNGVNGEWGKPPNQHSSSDISGKGSTGWDSASAASQTPALQPGSEHMNSWAKATS
SGTTASEGSSDGSGNHNEGGTGREGGEGRRRDKGVLDQGHIQLPRNDLDPRVLSNSGWGQ
TPVKQNTAWEFEESPRSERKNDNGTEAWGSVATQPSNSGGKTDGSIMNSTNTSSVSGWVS
SPPATVPANTGWGDSNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPTWG
EPQKPKSQNWGDGQRANPAWSAGAGDWADSSSVLGHLGDGKKNGSGWDADGNRSGSGWND
ATRCGTSGWGSGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNSVSNWGGAASVKQTGTGW
IGGPLPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYNNKTVSMWDRNNPVI
QSSATAPATPTTPTSSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPNVHSKAENS
WGEPSSPSTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASGPAAAPALCKPASKSMQE
GWGSGADEMSLGASQWEDEDGDMWNNAASQESSSSCSSWGNASKKGLQKGMKTPGKQDEA
WIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKRGLGMTDYNGMVT
KPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSALP
NQALGGIASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQPPPVQPLNSSQPSLRAQV
PQFLSPQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQ
AQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSAGK
SGMDSFPPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVSSIDMSSGLSVKDPSQ
SQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQN
SESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQNIDPENDPDVTPG
SVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTTAPT
RPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRT
LCLQHGPLVTFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRF
LAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWGGVP
QYSSSLWGPPSADDARVIGSPTPLNTLLPGDLLSGESI
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagacaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacttactaagacctgttcaagccagccc
caacctgccggtaccagtcccagtacttccaccagcactatttctagcggcagcaatggc
aaacgtgcatccgcctgtggccagcagccagctgcatcccgttacctgcctcgggaggtg
ccgccacgctttcgccagcaagaacagaagcagctgttaaagagaggtcagccattgccc
acagggagtctaaccagtgtgagcccagctcaggcttctggacctgtaggggccagccct
cctccactccctggagctggggcccaacaacatcccagcaaactccaaccagatcttggt
cacagtggattggcagatcattatgaaaattcccactggggacagcatccctcttacaga
agtgaagccaactgcagctgggataaagtgataatagacaggactgacccggaggtgtgg
ccatccatcccagtaaccgagactgactctgcctcagaatgtcctacagacactgactct
gcctccaactgtggctcagagaacaggagcatggccacagggagcacccagagcagcttc
ccaggccacccgaagaagacaaacggcagccatggcaccaatggtgcactcgtccaaagc
ccttctaaccagagtgcccttggggcaggaggagccaatgggaacgggggcgtggccaga
gtgtggggtgtagccacaggctccagctctggcctggctcactgctctgttggtggtgga
gatgggaaaatggacaacatgattggagatgggagaagtcagaattgttggggtgcttcc
aactccaatgcgggcattaacctcaaccttaatcctaatgccaacccagctgcctggcct
gtacttgggcatgaaggaactgtggcaacaggcaacccttccagtatttgcagtccagtc
agtgccataggtcagaatatgggcagccagaatgggaacccagtgggcaccctaggtgcc
tggggaaacttactgccccaagagagcacagaaccacagacatccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatg
aactcttcaccaaaccctatcaatgcaatgcagacaaatggactgccaaactggggcatg
gctgttggtatgggggccatcatcccaccccacctgcaaggcctacctggtgctaatgga
tcatcagtctctcaaggcagtgggagtggtggggaaggaatgggcagttctgtgtgggga
ctgtcccctggtaaccctgccacaggaagtaccaattgtgggttcagtcaggggaatgga
gacactgtgaattcagcattaagtgctaagcagaatggatccaacagtgctgtgcagaag
gaagggaatggagggaacgcctgggactcagggcctcctgcagggcctggcatccttgcc
tggggcaggggcagtggcaacaatggcattggtaatatccattcaggagcttggggccac
cccagccgaagttcttctaatggtgtgaatggggagtgggggaagccaccaaaccagcat
tccagtagtgacatcagtgggaaaggatcaacagggtgggacagtgccagtgctgccagc
cagacccctgctctgcagcctggcagtgaacacatgaactcgtgggccaaagccacatct
tctggaactacagcaagtgaaggaagcagtgatgggtccggcaatcacaatgaaggaggc
actgggagggaaggaggagagggccggaggcgagacaaaggggttctagaccaagggcac
atccagttgccaaggaacgatcttgacccaagagttctgtccaatagtggttggggacag
actcctgtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgaaaggaaa
aatgacaatgggacagaggcctggggtagtgtagctactcagccttcaaactcagggggg
aagactgatgggtccatcatgaacagtacaaatacctcttcagtatcggggtgggtcagc
tcgccacctgccaccgtgccagcaaacacaggctggggagacagcaacaaagcgccaagt
ggcccaggagtttggggggactcaataagctctactgctgttaacaatgctgctgccacc
aagagtggccatgcttggagtgggactgtaaaccaggaggacaaatcacccacctggggt
gagcctcagaaacccaaatcccaaaactggggagatggacaaagagcaaacccagcctgg
agcgcaggagcaggagactgggcagactcttcatctgtccttggacatctaggggatgga
aagaaaaatggatctggatgggatgctgatgggaataggtcagggtctggttggaatgat
gccacaagatgtgggaccagtggctggggcagtggcacaaatgctaaggtgaatccaggt
acaaactggggggagtctctcaagcctggtccccagcagaactgggctcacaagccccaa
gacaacagtgtgagcaactggggaggagctgcttctgttaagcagacagggacagggtgg
attggggggccactgccagtcaagcagaaggacagcagtgaggcgactggctgggaggag
ccttccccaccctccatccgacgcaaaatggagattgatgatggtacctcagcttggggg
gacccaagcacctacaacaataaaactgtaagcatgtgggacaggaacaacccagtcatc
cagagcagtgccacagcccctgccacccccaccacccccacctcgagcagcaccacacac
cgggccgagacgccgccttcacaccaggctggcactcagctgaatcggtcaccactgctc
gggccagtttcatccggctggggagagatgcccaatgttcactccaaggccgagaactcc
tggggagagccatcttccccttctaccctggttgacaacggcacagcagcgtgggggaag
cctcccagcagtggcagtggatgggatcatcctgctgagccagtggtgccatttggaaga
gccagcggtcctgctgctgccccagccctgtgcaaaccagcttccaaatctatgcaagaa
ggctggggcagtggtgcggacgaaatgagcctgggtgccagccagtgggaggatgaggac
ggggacatgtggaacaatgctgcctcgcaagaaagcagctcatcctgcagctcctggggc
aatgcctcaaaaaaaggacttcagaagggcatgaagacgcctggcaaacaggatgaggcc
tggatcatgagccggctgatcaaacaactcacagacatgggcttcccgagagagccagct
gaagaggccttgaaaagcaacagtatgaaccttgaccaggccatgagtgctctgctggaa
aagaaggtggacatggacaaacgtggactgggaatgactgactacaatggaatggtcacc
aaacccctcggctgccgcccaccaatctccaaagagtcttccatggaccgccccaccttc
cttgacaagctcaccctttctttctccaatcaggatggcggcctcgtggaagagcccacg
acttcaccgtttttgccttccccaagcctgaagctccccctttccaacagtgcactcccc
aatcaggccctgggtgggattgcctcagggctgggcatgcaaaacttgaactcttctaga
cagatcccgagtggcaatctgggtgtgtttggcaatagcggagcagcacaagccaggacc
atgcagccgccgccagtgcagcctcttaattcctcccagcccagcctccgcgctcaagtg
cctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacatt
ggtctcagccctgcactattaacctcgccaattaaccctcagcatatgacgatgttgaac
cagctctatcagctgcagctggcataccaacgtttacaaatccagcagcagatgttacag
gcccagcggaatgtttctggacccatgaggcaacaggagcagcaagttgcgcgcacaatc
actaatctgcagcagcagatccagcagcaccagcgccagctggcccaggccctgcttgta
aagcagcctccacctccaccacccccgccgcacctgtctctgcacccctctgcaggcaaa
tcgggcatggatagcttcccccctcacccccaggctcctggccttcccgacctgcagacc
aaagagcagcagtcttcacccaacacctttgctccttaccctcttgctggattgaaccca
aacatgaatgtcagcagcatagacatgagcagtggtctgtctgtgaaggacccatctcag
tcccagtcacgcctgcctcagtggacacatcccaactccatgggtaacttgtctagtgct
gcttctcccctggaccagaatcctagcaagcatggtgctatccctggaggtctaagcatt
gggcctccaggtaagtcctccattgacgactcctacggccggtacgatttaattcagaac
agtgagtcaccagccagtcctcctgtagctgttccccatagctggtcacgtgccaaatct
gacagtgataaaatctcaaatggttccagcatcagctggcccccagaattccatcctgga
gttccatggaaaggacttcagaatattgatcctgagaatgatcctgatgtcactcctggc
agtgtccctacaggacctaccatcaacaccaccatccaggatgtcaaccgctacctcctc
aagagtggaggtaagctgtccgatattaaatcaacatggtcctcaggcccagcctctcac
acgcaagcctctctgtctcatgagctatggaaggtacccagaaacactactgcacccacc
aggccgcctccaggcttagccaatcccaagccttcctccacctggggcaccagccccctt
ggctggaccagctcctactcctcgggttctgcatggagtactgacacctcaggaagaaca
agcagctggctcgttctgcgcaatctcacaccccagattgatggctccacactgcggaca
ctgtgtttgcagcatggacctctcgtcacgttccacctgaacctaacccaaggcaacgct
gtggtccgatacagttccaaggacgaagccgccaaggcccagaagtctctgcacatgtgt
gtactgggaaacaccaccatcttggctgagtttgctggtgaagaagaagtgaaccggttc
ctggcccaaggccaagcccttcccccaacctccagctggcagtccagcagcgggggcagc
cagcccaggctgggcacctcgggcagcacccacggcctagttcgcagcgacactgcccac
tggaacaccccgtgcctgagcggcaaaggcagcagtgagctgctgtggggtggggtcccc
cagtactcaagcagcctgtggggcccgcccagtgctgatgacgccagggtgatcggcagc
cccacgcctctcaacactctgctgcctggggacctgctcagcggcgagtccatctag
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