Arvicanthis niloticus (African grass rat): 117711554
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Entry
117711554 CDS
T08817
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
117711554 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
117711554 (Slx4)
03400 DNA repair and recombination proteins [BR:
anu03400
]
117711554 (Slx4)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
117711554 (Slx4)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117711554 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117711554
NCBI-ProteinID:
XP_034363182
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All DBs
Position
6:complement(92987236..93010442)
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AA seq
1742 aa
AA seq
DB search
MEESDDDFKELCASFFQRVKKKAAKEASGERLRRKASGHTQNRGKRKEASQAVARSEALQ
GPSEKKPRLGSQTPRTKKQGAPKSQEGDPALPVIGKGGVLAPTPDQPVLCERAQSIQTES
ASNGDSQPLPSCLTTTTTTGVPSPSKPRASELVLQRMKQFKRADPERLRHASEESSLKTA
VGENAPRSPQEEIALDDEYNPGSPATDSDAAMALALQQEFKREEASSRHDSLEEKGLFFC
QMCQKNLSAMNVTRREQHVNRCLDEAERALRPAPPQIPDCPICGKPFLTTKSRISHLKQC
AVRMEVGPQLLLQAVRLQAAQPEVGGSPQVPSFSNHVGGLKRKGATNKREPQRRWKVNKP
EAPSEDVLMAMALSRSEMEHCPAVPPLRLENAFSEKIRLGAEKKSRRKRPPVCPPQLVTQ
DSETTSRQIEDRVAQLLAEEIELSCTPPLPTSKIFKEELEHAGWRVQLPEGKQNFLWELS
ALTRAWAKESFYTVGLLPPVVSQCSTKEPELPQELPRQRESSSQRPPASQSSLPVSHSPE
NQLLSSSQRERQALQDLVDLAVEGLSSGPWPRSPGVPTGLDLVPSSLPLTGFVLPCNKTL
KKDDSASLSLGLLAADFGAMVNNPHLSDVQFQLDSGEVLYAHKFVLYARCPLLIQRVNTE
GFSAVEDGDLTQRFLLSDVSSEAAHAFLNYLYMADTDMPPSLAPDLRSLALRFGISDLVH
LCEQVPAMADLEGEQLEDSEDCKSRAETFQELLRSVWADEEEEAETLLKPEVCEEDREKV
NEAEMEEIYEFAATQRKLLQGERAVDMNGNADQCREDSPVSEPSLAGVQSDRPLENTEQM
ELSGLEKEETLASYKQEGDSIPLQDKCPEWAGKAEAQNVLGDAVDHPNLCSPSDSHQGRG
KECLPLHPNNAYDCKHLLPSSQRVSSGLSQITVDHEEQSDRVREGQADVTQAPSPHPCCL
LSQTSVGGSPSQSWLHLYHTSSLSPSVSQSHSSISKVVSPPSSLSPVTPTKQRRNRNILT
LRKEAGRHKSKQSSPVSERRSRGILISPAKSPPIDLTQSVPEPLSPRAQDPLRHVKKEDE
VILLLDSDEERELEHTKTESVSKDSPEERKVPEVSPRSSELFSVIDVEEDQEYFQSPLKR
EAGLQQGEEGQLGNQSALGRRDIPWLFCSQKTSLDEDSATDTSWLVPATPGASKSRDCWS
QTQIKSLKIRTLSDEPAQQTLRSNLERRTVLEAAQQFSVIMPHTQPVTLGASDSRRQAYR
SPSQSYPGRHRLSSSQPLCPVPDFTTWSQKSSSPRPCLPNPPAADEVVEVGDSDDEQEVV
SHQGNSSPVLDGDPPGPMGDYCWREPLSPIPIDHLNLERTGPLITSSPSRQVQGALPNDD
CHSPGLGTTPVRGSYGVLRESPKQSSQSGSPESSKLSVLSQALWDDWDEEEGHSTEAPPV
AQMPSARTRKPDRPETPKGANQKKNLPPKVPITPMPRYSIMETPVLKKELDRFGVRALPK
RQMILKLKEIFQYTHQTLESDSEDEIQSSQIPPEVPCSQASTIETCNPSRSGSYTQLRAT
ASLGTRGSKGPTKSKSLQRQGKQLRESVSHPSRLPSRPDGDAPLPASQESMATSVDGSDN
SFSSQSSSGEFGAAFESAGEDKDEEDGLTASQVAIRAADAEEAVRHYICSKPALHRKVLM
YQPLELAELQAELKQNGIPVAMGKLLDILDAQCITFTTAAARKEKLKQKRRQPVGRKKKH
QK
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcagatgatgatttcaaagaactctgtgccagctttttccaaagggtgaaa
aaaaaggcggccaaagaagcgtcaggagagaggctgaggcggaaggcctccgggcacact
cagaacagaggcaaacggaaagaagccagccaagctgtcgccaggagcgaagcccttcaa
ggcccttcagagaagaaacctcgattaggcagccagacccctaggacaaaaaagcaaggg
gcacccaaatctcaagaaggggacccagctctccctgtgattggaaagggaggtgttctt
gctcccaccccagatcagcctgtgttgtgtgaaagagcacagagcattcagacagagagt
gcttccaatggcgactcccagccccttccttcctgtctcacgacgacgacgacgactggt
gtgccaagtccctccaaacccagagcctcagagctggttctgcaacggatgaagcagttc
aagagggcagaccctgagcgcttgagacatgcctcagaagaatcctccctaaagactgca
gtgggagaaaatgccccaaggagccctcaagaggagatagcgctggatgacgagtataat
cccggctctcctgccacagacagcgatgctgcaatggccctggccttacagcaggagttt
aaaagggaggaagcatcctcacgtcatgacagcctggaggagaaggggttgttcttctgt
caaatgtgtcagaaaaacctgtcagcaatgaatgtgacccgcagggaacagcatgtgaac
agatgcctagatgaggcagagagggcactgagacctgctccacctcagatccctgattgc
ccaatatgtggtaaaccattcctcaccaccaagagccgaatcagtcacttgaagcagtgt
gcagtgaggatggaggtgggtccccagcttctgcttcaggctgtgaggctgcaggcagct
cagccggaagtgggcggcagccctcaggtacccagtttcagcaaccatgttggaggtttg
aaacggaaaggagccaccaacaagagggagccacagaggaggtggaaagtcaataagcct
gaagctccgtctgaagatgtgctgatggccatggctctgtctcgctctgagatggagcac
tgtccagctgtgcccccactcagactggaaaatgctttttctgagaagataaggctagga
gcagagaagaaaagtcgcaggaagagacccccagtgtgtcccccacagttggtaacccaa
gactctgagaccacaagcagacagattgaggatcgtgttgcccagctcctggcagaagaa
atagaactgtcttgcaccccaccacttcctaccagcaagatttttaaggaagaattggaa
catgcaggctggcgagtgcagctgcctgaagggaagcagaattttctgtgggaactcagt
gccctcacaagagcctgggctaaggagtccttctacacagtgggcctgcttcctccagtt
gtgtctcagtgctctaccaaggaacctgagctacctcaggagctgcccaggcaacgagag
tcaagttcacaaaggccgcctgcttcccagagcagccttcctgtgagccacagccctgag
aaccagctgctgtcctctagtcagagggagcgtcaagccctgcaggaccttgtggacttg
gcagtggaggggttgagctctggcccgtggcccaggagtccaggcgtacccacagggttg
gacttggtacctagcagccttccactgacgggctttgtcctgccatgtaataagaccctt
aagaaggatgacagtgcctcactctctcttgggttattggcggcagactttggggccatg
gtcaataacccacacctgagtgatgtgcagttccagcttgacagcggggaggtgctttat
gctcacaagtttgttctgtatgctcgatgcccacttcttattcagcgtgtaaatactgaa
ggcttctctgctgtagaggatggggatctgacccaacgctttctgctgagtgacgtgagc
tctgaggccgcccacgcgtttctgaactacctctacatggcggacactgacatgcccccc
agcctggctcctgatctgcgttccctggccctaaggtttggtataagtgaccttgttcat
ctgtgtgaacaagtgcctgccatggcggacttagagggagagcagctggaggacagtgag
gattgcaaaagcagagcagagactttccaagaactcctgaggtcggtgtgggcagatgaa
gaggaggaagcggagactctgctgaaacctgaggtctgtgaagaagacagagaaaaagtg
aatgaagcagaaatggaagagatatatgaatttgcagctacgcagaggaagcttctccag
ggggaaagagcagtagacatgaatgggaacgctgaccagtgcagggaggacagtccagtt
tctgagccttccctggcaggtgtccagagtgacagaccgctagaaaatacagagcaaatg
gagttgtctgggttagaaaaagaagagacactagccagctacaaacaagaaggagattcc
attccactgcaggacaagtgcccagagtgggcagggaaagcagaggcccagaatgtactg
ggggatgcagttgaccaccccaacttatgcagcccttctgacagccaccaagggaggggg
aaagaatgcttgcctttgcacccaaacaacgcctatgactgcaaacacctccttccatca
agtcaaagagtgtcatctggactgtcacaaataacagttgatcatgaagagcagagtgac
cgtgtcagggaggggcaggctgacgtgacccaggcaccttctccacacccctgctgcctc
ctgtcacagacttctgtgggtggaagtcccagccagtcatggcttcacctataccacaca
agcagtttgtccccctcagtgtcccagtcacacagtagcatttccaaggtggtgtcccca
ccaagctcactgtctccagttacaccaactaagcaaaggaggaatcgtaacattctcacg
cttcggaaagaagcaggccggcacaaaagcaaacagagtagccctgtatctgaacgcaga
agtaggggcatcctaatttccccagcaaagtctccacccattgacctgactcagtcggta
cctgagcccctgagccccagggcccaggatcctctgcgtcacgtgaagaaggaggacgag
gtcatcctgttactggattcagacgaggagcgggagctggagcacaccaagacagagtca
gtttctaaagattccccggaagaaaggaaagttccagaagttagccccaggtcctctgaa
ctgttttcagtcattgatgttgaagaagatcaagaatatttccaaagcccactgaagaga
gaggccgggctgcagcagggagaagagggacagctgggaaaccagtctgcactgggccgc
agagacattccctggctgttctgcagccagaaaaccagcctggatgaagacagcgcaaca
gacacctcctggctggtgcctgccactccaggggccagcaagagtcgtgattgctggtca
cagacccaaatcaaaagccttaagatcaggactttgtcagatgaacctgctcagcaaaca
ctcaggtctaacttagaacgcaggactgtgctggaagcagcccagcagttctctgtgatc
atgccacacacacagcctgttactctaggagcctctgacagcagaagacaggcctacaga
agcccttcccagtcctaccccgggcgccacagactctcttcttcacagccattgtgtcct
gttcccgactttaccacatggtcccagaaatcttcctcacctagaccatgcctgccaaat
ccgcctgcagccgatgaagtggtagaagttggggacagtgatgatgagcaggaagtggtt
tcccatcaaggaaacagcagccctgtgctagatggtgaccccccaggtcccatgggtgac
tactgttggcgtgagcctctctcaccaatcccaattgaccacttgaatctggagcggact
ggccccttgatcacaagcagtcccagcaggcaggtccagggggctctgcctaatgatgac
tgccactccccaggactcggcaccaccccggtccgaggaagctatggtgttctgagagag
tctccaaagcagtcctcacagtctggctctccagagagcagcaaactcagtgtccttagc
caggctctgtgggatgactgggatgaggaggaaggacactctacagaggctccacctgtg
gcccaaatgccgagtgccagaactcggaagccagacaggccagagacaccaaaaggtgct
aaccagaaaaagaatttaccccccaaagtgcctataactccaatgccaaggtattcaatc
atggagaccccggtgctgaagaaagaactggacaggtttggagtccgtgctctgcccaaa
cgccagatgatcctaaaactgaaggagattttccagtacactcaccagactctggagtca
gactctgaggatgagatccagtcctcccagatacccccagaggtaccttgcagccaggca
tctaccattgagacctgcaacccttcaagatcaggaagttacacccagctcagggccact
gcaagtcttgggactcgaggatccaagggccccactaaaagcaagagccttcaacgacaa
gggaagcagctccgtgaaagtgtttcccacccaagcaggttgccttcacgccctgatggc
gacgccccactcccagcctcccaggagtccatggctacctctgtggatggcagtgacaac
tcctttagctctcaaagctcctctggtgagtttggagctgcctttgagtctgcaggtgaa
gacaaggatgaggaggatggtctcaccgcatcgcaggtagcaatccgggctgcagacgca
gaggaggcagtgaggcactacatctgctccaagcctgccctgcacaggaaggtcctgatg
taccagcctctggagctggctgagctgcaggctgagctgaagcagaatggcatccctgtg
gccatgggcaaactgcttgacatcctggatgctcagtgcatcaccttcacaactgctgca
gcccgaaaggagaagctcaaacagaagagacgacagcccgtgggccgaaagaaaaagcat
cagaagtga
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integrated database retrieval system
