Arvicanthis niloticus (African grass rat): 117711612
Help
Entry
117711612 CDS
T08817
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM47-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04064
NF-kappa B signaling pathway
anu04622
RIG-I-like receptor signaling pathway
anu05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
117711612
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117711612
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
117711612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
117711612
Enzymes [BR:
anu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117711612
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117711612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRIM_CC
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
PRY
ANCHR-like_BBOX
Sina_RING
zf-RING_4
zf-Nse
U-box
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
117711612
NCBI-ProteinID:
XP_034363281
LinkDB
All DBs
Position
6:complement(6998425..7005616)
Genome browser
AA seq
622 aa
AA seq
DB search
MKQQPQRKVRRQRSSVNRAAKYLALINMQKISRPAQDIPPTQLSSQSSRAPLQLLMNSNS
SQHTLEDQVLCPICLEVFRNPVTTACGHNFCMTCLQSFWDHQAAIGETYYCPQCREAFPS
RPRLCKNVILGEMVACFTQAKSQTSGPLWGLAGPTDVPCDFCSPQKLRAVKSCLQCVASL
CEKHLRSHFEDQLFQDHQLLEPVWDLKNRLCRKHRKLRQLYCRTEGSSMCGACLLEEHKN
HDTTPLEDERARKEVEVRKIQANVENQMLIIASDSQKHQGRVSFLSKLIQTMRDEVNTCF
SEILHEIKQLQMKVLDFVEKEEATALGKLGNSIQQSHNRLLKLEGDSVWLHSLLANRSDE
QFLQEFPRLKHFPACMEPLLGTNCEETQSFLQLPETLAQLRIRLTDIGLSFINQLLLKGI
RMSSYEVLPSAVDRKTLLQNYCNLNFDPSTASEELFLFKETHSVLNLGILLEPSTTPLPG
FKQWPQVLCCPGLNEGCHYWEAEVSNSWMCLGVTYRRSPPMSGRPRRNIVYLLGRNPYSW
CLEWDSLKFSVWHNNTQTVLHGSYHHTLGVALDFGTGCLSFYGVAGDVSLLYRFLTSFLE
PLYPAVMVSSGASLTLRQYPEA
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcagccacagagaaaggtgagaagacaacgatcatcagtcaacagggcagca
aagtatctggctctcattaacatgcagaagatctcacgaccagcccaggacataccccca
acacagctgtcttcccagtcctccagagccccacttcagctcctgatgaacagcaacagc
agtcaacacacgttggaagaccaagtcctctgtcccatttgcctggaggtgttccgcaat
ccagtcactaccgcctgcggccataacttctgcatgacttgccttcagagtttctgggat
caccaggctgccattggggaaacttactattgcccccagtgcagagaggcctttcctagc
aggccccgcctctgcaagaatgtcatcctcggagagatggtggcttgcttcacccaggcc
aagagccagacctcagggcccctgtggggcctggctggccccacagatgtgccctgtgac
ttttgctctccgcagaagctgagggcagtcaagtcatgcctgcagtgtgtggcttccttg
tgtgagaagcatctgcgcagccactttgaggaccagctgttccaggaccaccagctgttg
gagccggtgtgggacctcaagaaccgcttgtgccgcaagcaccgcaagctccggcagctg
tactgtcgcacggagggcagctccatgtgcggagcctgcctgttggaggaacacaagaac
catgacaccacccccctggaggatgaacgggcccgcaaagaggtggaagttcggaagatt
caggccaatgtggagaatcagatgctgatcattgcctcggacagccagaaacaccagggt
cgagtgagttttctctcgaaactgattcagacgatgcgagacgaggtgaacacctgcttc
tcagagatccttcatgagattaaacagctgcagatgaaggtcttggattttgtggagaaa
gaggaggcaactgccctgggaaagctaggcaactctatccagcaaagccacaaccggctc
ctgaagctggagggggacagcgtctggctccacagcctgcttgccaacaggagtgatgag
cagttcctacaggagttccccagactgaagcacttccctgcctgcatggaacccttgcta
ggcaccaactgtgaggagacacagagcttccttcagctgccagagaccctggcccagctc
cgcatcaggctgacggacataggtctcagtttcatcaaccagctgctcttgaagggtatc
aggatgagctcctatgaagtactgccctcagctgtggacagaaagacactactccagaat
tactgcaacctgaacttcgacccctccacggccagcgaagagctattcttgttcaaggaa
acgcactcggtgttgaacttgggcatacttctggagccctcgaccacccctttaccgggc
ttcaagcagtggccccaggttctatgctgcccaggcctgaacgaaggctgtcactactgg
gaggccgaggtatccaactcgtggatgtgcctaggagtcacctaccgtcgcagccctccg
atgagcggtcgccctcgtcgcaacatcgtctacctactgggccgcaacccctactcgtgg
tgtctggagtgggactcgctcaagttctccgtgtggcataacaacacacagacggtgctg
cacggctcctaccaccacacgctcggcgtggcgctggacttcgggaccggctgcctgtcc
ttctatggcgtggcgggcgatgtgagccttctctaccgcttcctcacctcctttctcgaa
cctctgtaccccgcggtcatggtcagcagcggagcctcgctcacactcaggcagtaccct
gaggcatag
DBGET
integrated database retrieval system
