Arvicanthis niloticus (African grass rat): 117711932
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Entry
117711932 CDS
T08817
Symbol
Dchs1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04392
Hippo signaling pathway - multiple species
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04392 Hippo signaling pathway - multiple species
117711932 (Dchs1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117711932 (Dchs1)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Cadherin related
117711932 (Dchs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_4
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
117711932
NCBI-ProteinID:
XP_034363811
LinkDB
All DBs
Position
1:complement(74605398..74639288)
Genome browser
AA seq
3291 aa
AA seq
DB search
MQKELSVALSCPGMKGLRTLLPLLVLLGATVPGTWGQAGSLDLQIDEEQPAGTLIGDISA
GLPPGTAPPPMYFISAQEGSGVGTDLAIDEHSGVVRTARVLDRERRDRYRFTAVTPDGAT
VEVTVRVADINDHAPAFPQARAALQIPEHTALGTRYPLEPARDADAGRLGTQGYALSGDG
AGETFRLETRPGPGGAPVPELVIAGELDRENRSHYMLQLEAYDGGSPPRRAQALLDVTLL
DINDHAPTFNQSRYHAVVSESLAPGSPVLQVFASDADAGANGAVTYEINRRQSEGDGPFS
IDAHTGFLRLERPLDFEQRRVHELVVQARDGGAHPELGSAFVTVHVRDANDNQPSMTVIF
LSADGSPRVSEAAPPGQLVARISVSDPDDGDFAHVNVSLEGGEGHFALSTQDSVIYLVCV
ARRLDREERDVYNLRVTATDSGSPPLRAEAAFVLHVTDVNDNAPAFDRQLYRPEPLPEVA
LPGSFVVRVAARDPDQGTNGQVTYSLAPGTHTHWFAIDPTSGIITTAATLDYELEPQPQL
IVVATDGGLPPLVSSATVSVALQDVNDNEPQFQRTFYNASLPEGTQPGTCFLQVTATDAD
SGPFGLLSYSLGAGLGASGSPPFRIDAHSGDVCTTRTLDRDQGPSSFDFTVTAIDGGGLK
SMVYVKVFVADENDNPPQFYPREYAASLSAQSAPGTAVLRVHAHDPDQGPHGRLSYHILA
GNSPPLFALDAHSGLLTVAWPLVRRANSVVQLEIGAQDGGGLQAEPIARVNISIVPGTPT
PPIFEQLQYVFSVPEDVAPGTSVGIVQAHNPPGRLGPVTLTLSGGDPRGLFSLDSPSGLL
KTLRPLDRELLGPVLELEVQAGSGIPPAFAVARIRVLLDDVNDNPPAFPAPEDTVLLPQN
TAPGTPVYTLRALDPDSGANSRVTFSLLAGGDGLFTVDPITGHVQLMGPLGPPGGPAHEL
EVEARDGGSPPRTSHFRLRVVIQDLGIHGLAPRFDSPTYRVDLPSGTTTGTQILQVQAQA
PDGSPVTYHLAADGASNPFGLESQSGWLWVRTALDRESQELYTLKVMAVSGSKAELGQQT
GTATVRVIILNQNDHSPRLSEEPTFLAVAENQPPGTSVGRVFATDRDSGPNGRLTYSLQQ
LSEDSKAFRIHPQTGEVTTLQTLDREQQSSFQLLVQVQDGGSPPRSATGTVHVAVLDLND
NSPAFLQASGAAGGGLPIQVPDRVPPGTLVTTLQAKDPDEGENGTILYTLTGPGSELFSL
HPHTGELHTAASLVRAERPHYVLTLSAHDQGSPPRSASLQLLVQVLPSTRMVESPDLIEA
DSAATVPVVLTVTAAEGLRPGSLLGSVAPQEPASVGILTYTLVGGADPEGTFALDSASGR
LYLARPLDFEAGPAWRALTVRAEGPGGAGARLLRVQVRVQDENEHAPAFARDPLALALPE
NPDPGATLYTFRASDADGPGPNSDVRYRLLRQEPPVPALRLDARTGALSAPRGLDRETTP
ALLLLVEATDRPANASRRRAARVSARVFVTDENDNAPVFASPSRVRLPEDQPPGPAALHV
VARDPDLGEAARVSYRLAAGGDGHFRLHATTGALSVVRPLDREQRAEHILTVVALDHGSP
PRSSTQLLTVSVVDVNDEAPAFPQQEYNVILRENSPPGTSLLTLKATDPDLGANGQVTYG
GVSGESFSLDPNTGVLTTLRALDREEQEEINLTVYARDRGLPPLLTYITVRVTVEDENDH
TPTFGNTHLSLEVPEGQDPQTLTTLRASDPDGGLNGQLQYRILDGDPSGAFALDLTSGEF
GTMRPLDREVEPAFQLQIEARDGGRPALSATLLVTVTVLDANDHAPAFPVPSYSVEVPED
APVGTLLLQLQAHDPDDGDNGRVMYYLGAGTAGAFLLEPTSGELSTATALDREHCASYAF
SVTAVDGAAAGPLSTTVPITITVRDVNDHAPAFPTSPLRLRLPRPGPSLNKPTLALATLR
AEDRDAGANASILYRLAGTPPPGTTVDSYTGEIRVARSPVALGPRDRVLFIVATDLGRPA
RSATGVVIVGIQGEPERGPRFPRASNEAVLRENAPPGTPVISPKAVHSGGSNGPITYSIL
SGNERGIFSIQPSTGAITVRSAEELDFETSPRLRLVLQAESGGAFAFSVLTLTLQDANDN
APRFLRPHYVAFLPESRPLEGPLLQVEADDLDQGSGGQISYSLAASQPARGLFHVDPATG
TITTTAILDREIWAETRLVLMATDRGSPALVGSATLTVMVIDTNDNRPTIPQPWELQVSE
DALLGSEIAQVTGNDVDSGPVLWYVLSPSGPQDPFSIGRYGGRVSLTGPLDFEQCDHYHL
QLLAHDGPHEGHANLTVLVEDVNDNVPTFSQSLYQVMMLEHTPPGSAILSVSATDRDSGA
NGHISYHLASPAEGFRVDPNNGTLFTTVGAMALGHEGPGVVDVVLEARDHGAPGRTAQAT
VHVQLKDQNDHAPSFTLPHYRVSVSEDLPPGSTLLTLEATDADGSRTHATVDYSIISGNR
GRVFQLEPRLAEVGDGVGPGPQALGCLVLLEPLDFESLTQYNLTVAAADRGQPPRSSAVP
VTVTVLDVNDNPPVFTRASYRVTVPEDMPVGAELLHVEASDADPGPHGLVHFTLSSGDPL
GLFELDENSGALRLARPLDCETQAQHQLVVQAADPARTHFALVPVTVEVQDVNDHGPAFP
LSLLSTSLAENQPPGTLVTTLHAIDADAGTFGRLRYSLLEAVPGPEGREAFSLNSSTGEL
RARVPFDYEHTGSFRLLVGAADAGNLSASVTVSVLITGEDEYDPIFLAPSFHFQVPEGAQ
RGHSLGHVQATDEDGGADGLVLYSLATSSPYFGINQTTGALYLRVDSRAPGSGTTTSGGG
GRTRREAPRELRLEVVARGPLPGSRSATVPVTVDITHTALGLAPDLNLLLVGAVAASLGV
VVVLALAALVLGLVRARSRKAEAAPGPMSQTAPIASSSLQKLGREPPSPPPSEHLYHQTL
PSYGGPGAGGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEFPRVASVASSLAARGPDS
GIQQDADGLSDTSCEPPAPDTWYKGRKAGLLLPGAGATLYREEGPPATATAFLGGCGLSP
APTGDYGFPADGKPCVAGALTAIVAGEEELRGSYNWDYLLSWCPQFQPLASVFTEIARLK
DEARPCPPAPRIDPPPLITAVAHPGAKSVPPKPASTAAARAIFPPASHRSPISHEGSLSS
AAMSPSFSPSLSPLAARSPVVSPFGVAQGPSASALSTESGLEPPDDTELRI
NT seq
9876 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggagctgagtgttgcactctcctgccctggcatgaagggcctcaggactctg
ttaccattgctggtgctgttgggggctacagtgccaggaacctggggtcaggctgggagc
ctggacctccagatagatgaggaacaaccagcaggcacactgattggagacatcagtgca
gggcttccaccaggcacagcacctcctcccatgtacttcatctctgcccaggagggcagc
ggtgtaggcacagacctcgctattgatgagcacagtggggtggtccgtacagctcgtgtc
ctggaccgtgagcggagagaccgttaccgcttcactgcagtcactcctgatggtgccact
gtggaagttacagtgagagtagctgatatcaatgaccatgcaccagctttccctcaggct
cgggctgccctgcagatacctgaacatacagctcttggtacacgctacccactggagcct
gctcgtgatgcagacgccggccgcctaggaacccaagggtatgcactatctggtgatggg
gctggagagacctttcggctggagacacgtcctggtcctggtggagctccagtgcctgag
ctggtaattgctggggaactggacagggagaaccgctcacactacatgttacagctcgag
gcctatgatggtggctcacccccccggagagcccaggccctgctggatgtgacacttctg
gatatcaatgaccatgctccaactttcaatcaaagccgataccatgctgtggtgtctgag
agtctggcccctggaagtcctgtcttacaggtgtttgcatctgatgctgatgctggtgcc
aatggggctgtgacttatgagatcaacaggagacagagtgaaggtgatggacccttctcc
attgatgctcacacagggtttctgaggctggagcgcccactggactttgaacaaaggcga
gttcatgaactggtggtgcaggcacgggatggtggggctcacccagagctgggttcagct
tttgtgacagtgcatgtgcgagatgccaatgacaatcaaccgtccatgactgtcatcttc
ctgagtgctgatggctccccccgtgtgtctgaggctgccccacctggacagcttgttgct
cgaatctctgtgtcagatccagatgatggtgacttcgcccatgtcaatgtgtccctggag
ggtggagagggccactttgccctgagcacccaagacagtgtcatctatctggtgtgtgta
gctcgaaggctggatcgggaggagagggacgtctataacttgcgagtcacagccacggac
tcaggctcacccccacttcgggctgaagctgcctttgtattacacgtcacggatgtcaat
gacaatgcacctgcttttgaccgccagctctaccgacctgagcctctgcctgaagttgca
ttgcctggcagcttcgtggtacgggtggctgcccgggatcctgaccaaggcaccaatggt
caggtcacctacagtctggctcctggcactcacactcactggttcgccattgatcccacc
tcaggcatcatcaccacagctgccacactggactatgaactagaacctcagccacagctt
attgtggtggccacagacgggggcctaccccctttagtctcctctgccacagttagtgtg
gccttacaagacgtgaacgacaacgagccccagttccagaggacgttctacaatgcctcg
ctgcctgaaggtacccagcctggaacctgtttcctgcaggtaacagccacagatgctgac
agtggcccatttggcctcctctcctattccttgggtgctgggcttggagcttctggatct
cccccattccgcattgatgcccacagtggtgatgtgtgtaccacccggaccctggatcgt
gaccagggaccttcaagctttgacttcactgtgacagctatcgatgggggaggcctcaag
tccatggtgtatgtgaaggtgtttgtggcagacgagaatgacaacccacctcagttctat
ccacgggagtatgctgccagtctgagtgctcagagcgccccaggcacagctgtgctgagg
gtgcacgcccatgaccctgaccagggaccccatgggcgactctcctaccacatcctggct
ggcaatagtcccccactctttgcattggatgcacactcaggactgttgacagtagcctgg
cccttagtcagacgggctaattctgtggtgcaactggagatcggggctcaggatggaggt
ggtctgcaagcagaacccattgcccgagtcaacatcagtattgtgcctggaacccccaca
ccacctatatttgagcaactacagtatgttttttcagtgccagaggatgtggcaccaggc
accagtgtgggaatagtccaggcacacaacccaccaggtcgcttagggcctgtgaccctc
accctatcgggtggggaccctcgagggctcttctccctggattcaccctcagggctatta
aaaacacttcgtcctctagaccgggagcttctgggaccggtcctagagctagaagtccaa
gcaggcagtggaatccccccagcttttgctgtggctcggatccgtgtgctgctggatgat
gtgaatgataaccctcctgccttccctgcacctgaagacactgtattgctgccacaaaac
actgctccagggactcccgtctatacactgcgtgctctagaccctgactcaggagctaac
agtagagtcacctttagtctacttgctggaggtgatggattgttcactgtggaccctatc
acaggccatgtccagctcatgggacctctggggcctccagggggaccagcccatgagttg
gaggtggaggcccgggatggaggctccccacctcgcaccagccactttcgacttcgtgtg
gtgatacaggatttgggaatccatgggctggctccacgatttgacagccctacctaccgt
gtagacttgccctcaggcactaccactgggactcagatcctgcaagtgcaggcccaggca
ccagatgggagccctgtaacttaccaccttgcagcagatggagccagtaacccgtttggc
ctggagtcacagagtgggtggctgtgggtacggacagcattagaccgtgagtcccaggag
ttatacacattgaaggtgatggctgtatctggttccaaagctgaattggggcaacagaca
ggcacagccacagtgagagtcattatcctcaaccagaatgaccacagtccccgcttgtct
gaagagcccacctttctggctgtagcagagaatcaacccccagggaccagtgtaggccga
gtgtttgccactgacagagactcaggtcctaatgggcgtctgacctacagccttcaacag
ctttcagaagacagcaaggccttccgcatccacccccagactggggaggtgactacgctc
caaaccctggaccgagagcagcagagcagcttccagctcctggtgcaagtgcaggatggg
ggtagtccacctcgcagtgccacgggcactgtgcatgtcgcggtgctcgacctcaatgac
aacagtcctgctttcctgcaggcttcaggggctgctggtgggggcctccctatacaggta
ccagaccgagtgcctccaggaacactggtgacaactctgcaggccaaagatccagatgag
ggggagaatggaaccatcctatacaccctaactggtcctggctctgagctcttctctcta
catcctcacactggggagctgcacactgcagcatccctagttagagctgagaggcctcac
tatgtgctaactcttagcgctcatgatcagggcagcccccctcgaagtgccagcctccaa
ctgctcgtgcaggtgcttccctcaactcgaatggtggagtcaccagatctcatagaagct
gactcggcagcaacagtgcctgtagtactgacagttacagcagccgaggggcttcgacct
ggatccctgttgggttctgtggccccgcaggagccagctagtgtgggcatactcacctat
actctggttggtggcgccgaccctgagggcaccttcgcgctggactcagcctcaggtcgc
ctgtacttggcgcgtcccttggacttcgaggctgggccagcctggcgcgcgctcacggtg
cgcgcggaggggccaggaggcgcaggggcgcggctgttgagagtgcaggtgcgtgtacag
gacgagaacgagcacgcgcccgcttttgcgcgcgaccccctagcgctggcgctacctgag
aaccccgaccccggcgccacgctgtacactttccgtgcatcagacgcggatggcccaggt
cccaacagtgacgtgcgataccgcctgttgaggcaggagcctccggtgcctgccctgcgc
ctggacgcgcgcaccggagcgctcagcgctcctcgtggtctggatcgggagaccacaccc
gctctgttgctgctcgtggaagccaccgaccggccagccaatgccagccgccgtagggca
gcgcgcgtttcggcgcgcgtctttgtcacggatgaaaatgacaacgccccggtcttcgcc
tccccatcacgggtgcgcctcccagaagatcagcctcctgggcccgcggcgctgcacgtg
gtagctcgggatccagacctgggggaggctgcccgcgtgtcctatcgccttgcggctgga
ggggatggccacttccggctacatgcgaccactggagcgctgtccgtggtgcggcctttg
gaccgtgaacagcgagctgagcacatactgacagtggtggccttggatcatggctccccg
ccacgttcatccactcagctcctgactgtcagtgttgttgatgtcaacgacgaggcaccc
gctttccctcagcaggagtacaacgtcatccttcgtgagaacagtccacctggcacttct
ctgctcactctgaaggcaacagaccctgaccttggggccaatggacaagtgacttatggg
ggtgtctctggcgagagcttctctctggacccaaacactggagttctcacgactctaagg
gctttggaccgggaggagcaggaggagatcaatttgacagtctatgcccgggacaggggc
ttgccaccccttttaacttacatcacagttcgagtgactgtagaagatgagaatgaccat
actccaacttttgggaacacccacctctccctggaagtgcctgaaggccaggacccccaa
acccttaccacactacgagcctctgatccagatggaggactcaatggacagctacagtac
cgcatccttgatggggacccttccggagcctttgcactagatctcacttctggggagttt
ggcaccatgaggccactagaccgggaggtagagccagcattccagttgcagatagaggcc
agagatggaggccggccagccctcagtgccaccttgcttgtgacagtgacagtgttagat
gccaatgaccatgcgccagcctttcctgtgccttcttattctgtggaggtacctgaggat
gcacctgtagggaccctactgctgcaactacaggctcatgacccggatgatggggacaat
ggccgtgtgatgtactacctgggtgcaggtacagcaggggccttcctgctggagcctacc
tctggggaactgagcacagctacagccttggacagggaacactgtgccagctatgccttt
tctgtgactgcagtggatggtgcagctgctgggcctctgagcacgacagtcccaatcacc
atcacagtgcgtgatgtcaatgatcacgcacctgctttccccaccagtcctctgcgactc
cgcctaccccgcccaggtcctagcctcaacaaaccaaccctggctctggccacgcttcga
gctgaagatcgagatgctggtgccaatgcctccattctataccggctggcaggcacaccg
ccacctggcaccaccgtggactcttacactggtgaaattcgtgtggctcggtcccccgtg
gctcttggacctcgggatcgtgtgctcttcatcgtggctactgaccttggccgcccagct
cgctctgccactggtgtggtcattgttggaatacagggagagcctgagcgtggaccccgc
tttccccgagccagtaatgaggctgtgcttcgtgagaatgcaccaccagggactccagtt
atctccccgaaggctgtccactcaggaggctcaaatggaccaattacctatagcattctc
agtgggaatgagagagggatattctccatccaacctagcacaggagccatcactgttcgc
tcagcagaggagcttgactttgagacaagcccacggctacggctggtgctacaggcagag
agtggaggagcctttgctttctcggtgctgaccctgacccttcaagacgccaatgacaat
gctccccgtttcctgcggcctcactatgtggctttcctgccagagtcccgacccttggag
gggcccctgttgcaggtggaagcagatgacctggatcaaggctctggaggacagatctcc
tacagtctggctgcatcacagccagcacggggcttgttccatgtagaccccgccacaggc
actatcactaccacagccatcctggaccgagaaatctgggctgaaacacggctggtactg
atggccacagacagaggaagcccagcactggtgggctcagctaccctgacagtgatggtc
atcgataccaatgacaatcgccccaccatcccccagccctgggagctccaagtgtcagaa
gatgcactgttgggctcagagatcgcacaggtgactgggaacgatgtggactctggacca
gtgctatggtatgtgctgagcccatctgggcctcaggatcccttcagtattggccggtat
ggaggacgtgtctccctcacgggtcccctggactttgagcagtgtgaccactaccaccta
cagctgctggcacatgatgggcctcatgagggccatgccaacctcacagtgcttgtggaa
gatgtcaatgacaatgtacctaccttctcacagagcctctaccaggtaatgatgttggag
cacactcctcctggcagcgccattctctccgtctctgccactgacagagactcaggtgcc
aacggtcacatatcctaccatctggcttcccctgctgagggcttcagggttgaccctaac
aatggaactctgttcacaacagtaggagcaatggccttgggtcatgaggggccaggagtg
gtggatgtggtgctggaagcacgagaccatggggctccaggccggacggcacaggccacg
gtgcatgtgcagctgaaggaccagaatgaccatgccccaagcttcacgttgccacactac
cgtgtttctgtgtctgaagatttgccccctggttccaccctgctcaccctggaggccaca
gatgctgatggaagccgcacccatgctactgtggactacagcatcatcagtggcaatcgg
ggccgagtcttccagctggaaccccgtctggctgaggtcggggacggtgttggaccaggt
ccccaggctttgggctgcctagtgttgcttgagcctctagactttgaaagcctgacacag
tacaatttaactgtggctgcagctgatcggggacagccaccccgcagttcagccgtgcca
gtgactgtcactgtactggatgtcaacgacaacccacctgtctttacccgagcatcctac
cgtgtgacggtacctgaggacatgcctgttggagctgagctattgcatgtggaggcctct
gatgctgaccctggacctcatggcctcgtgcattttacccttagctcaggtgaccctttg
ggcctctttgagctggatgagaactcgggtgctctgaggctggcccgccctctggactgt
gaaacccaggctcaacaccagcttgtggtgcaggcagctgaccctgctagaacacacttt
gctttggtaccagtgacagttgaggtccaggatgtgaatgaccatggcccagccttccca
ttgagcctgctcagtaccagccttgctgagaatcagcctccaggcactcttgtgaccaca
ctacatgcaattgatgcggatgccgggacttttggtagactccgatatagcctgttggag
gcagtgccggggcctgagggtcgtgaggcattttcactgaacagctcaacaggggaactg
cgggcacgggtgccttttgactatgagcacacaggaagcttccggctactagtgggtgct
gctgatgctgggaatctctcagcctctgtcactgtgtcagtgctgattactggagaagat
gaatatgaccctatattcctggctccatctttccatttccaagtgccagaaggtgcccag
cgtggccacagcctgggccatgtgcaggccacagatgaggatggaggtgccgatggtctg
gtgctctattcactggctacctcttccccctattttggtatcaaccagacaacaggtgct
ttgtacttacgagtggacagtcgggcaccaggaagtggaacaaccacctctgggggtggg
ggccggacccgacgtgaagcacctcgggagttaaggctggaggtagtagcaagagggcct
ctgcctggatcccggagtgccacagttcctgtgactgtggatattacccacactgctcta
ggcctggcacctgacctcaacttgctattggttggggctgtggctgcctctttgggagtt
gtagtggtgcttgccctggcagctctggtcctgggccttgttcgggcacgaagccgcaag
gctgaggcagcccctggcccgatgtcacagacagcacccatagccagtagctctttacag
aaactgggtcgggaaccccccagtccaccaccctctgaacatctgtatcatcagactctc
cccagctatggtgggccaggagctggaggtccctaccctcgtggtggctccctggaccct
tcacattcaagtggccgaggctcagcagaggctgcagaggatgatgagatccgcatgatc
aatgagtttccccgtgtggccagtgtggcctcctccctggctgcccgaggccctgactca
ggcatccagcaggatgcagatggattgagtgacacgtcttgtgagcctcctgcccctgac
acctggtacaagggcagaaaggcagggttgctgctgccaggtgcaggagccactctgtac
cgagaggaggggcctccagccactgctacagccttcctggggggctgtggcctgagccct
gcacccactggggactatggcttcccagcagatgggaagccatgtgtagctggagcactg
acggccatcgtggctggtgaggaagagctccgtggcagctataattgggactacctgttg
agctggtgccctcagttccagcctctggccagtgtcttcacagagattgctcggctcaag
gatgaagctcgtccatgtcctcctgctccccgtattgacccaccacccctcatcactgct
gtggcacacccaggagccaagtctgttcccccaaagcctgcaagcacagctgcagcccgg
gccatcttcccaccagcctctcaccgctcccctatcagccatgaaggctccctctcctca
gctgccatgtcccccagcttctcaccctcactgtctcctttggctgctcgttctcctgtt
gtctcaccattcggggtagcccagggcccctcagcttcagcgctcagcacagagtctggc
ctggagcctcctgatgacacagagctgcgcatctag
DBGET
integrated database retrieval system
