Arvicanthis niloticus (African grass rat): 117712348
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Entry
117712348 CDS
T08817
Symbol
Btaf1
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117712348 (Btaf1)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
117712348 (Btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
Vac14_Fab1_bd
HEAT_MROH2B_C
HEAT_GCN1
TOR1L1_N
HEAT_2
TPR_Trm732_C
HEAT_GCN1_C
HEAT_GCN1_C_2
ARM_ECM29
UTP20
Rac1
Spe-44
Motif
Other DBs
NCBI-GeneID:
117712348
NCBI-ProteinID:
XP_034364073
LinkDB
All DBs
Position
1:143636468..143718354
Genome browser
AA seq
1848 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI
AAGQAVEAIVKNVPEWNPVPRAKQEPTESSMEDSSTTDRLNFDRFDICRLLQHGASLLGS
AGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYNPTSA
ALVNKQSTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGE
PEEKRRKVANVVINQTANDSKVLIDNVPESSSLIEETNEWPLESFCEELCNDLFNPSWEV
RHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVSD
EVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVRQ
DVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPSIINTLWDSLL
ELDDLTASTNSIMTLLSSMLTYPQVQQCSIQQSLTVLVPRVWPFFHHTISSVRRAALETL
FTLLSTQDQNSSSWLIPILSDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVVA
AACPWMSAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQIQNKEVLQEYIAGAD
TIMEDPATRDFVVMRARMMAAKLLGAVCCCICDPGVNMVNQEIKPAESLGQLLLFYLNSK
SALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEYLYYDEIAIPFTRMQNECKQF
ISSLADAHIEVGNRVNNNVLTIDQANDLVTTVFNEVTSTFDLNSQVLQQLDSKRHQVQMT
VAETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQYI
AKLLQQCTARTPCPNSKVIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSNSEKDGMH
HTVTKHRGIITLYRHQKAAFAITSRRGPIPKAIKAQIADLPAGSGGNILVELDEGQKPYL
VQRRGAEFALTTIVKHFGAEMAVNLPHLWDAMVGPLKTMIDLNNFDGKSLLERGDAPAQE
LVNSLQVFEIAAASMDSALHPLLVQHLPHLYMCLQYPSTAVRHMAARCIGVMSKIATMET
MNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDS
VRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKLENYKIPVP
INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQRAQEYARSKL
AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVA
SYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVL
ELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLL
RRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPK
LKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQ
LLLDCGLGNGSSSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI
PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH
RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD
KGGKAEKADSSTSGKASMKSVLENLSDLWDAEQYDSEYNLETFMRSLE
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctccagacttgatcgtctttttatcttactggatactggtaccactccagtt
acaagaaaagctgctgcacagcaacttggagaagtggtgaaacttcatccacacgaatta
aataatttgttatctaaggtgttaatatatttaaggagtgcaaattgggacacccggatc
gcagcaggacaagctgttgaagctatagtgaaaaacgtgcctgagtggaacccagtacct
agagcaaaacaagaacccacagagagttctatggaagattcatctactacagatcgatta
aattttgacagatttgatatatgtagattgttacagcatggggcatcacttttggggtct
gctggtgcagaatttgaagttcaagatgaaaaatcaggtgaagtggatcctaaagagagg
atagcacgtcaacggaaattattacagaagaaacttggacttaatatgggagaagcaatt
ggaatgagtactgaagaactcttcaacgatgaagatttggattataacccaacttcagca
gcccttgtaaacaaacaatctactctccaagcagctgaattgattgattcagaattccga
gcaggaatgagtaatagacagaagaacaaagctaaaagaatggccaagttatttgcaaaa
cagagatccagggatgcagtggaaacgaatgagaagagcaatgacagcactgatggagag
ccagaagaaaagagacggaaagtagcaaacgttgttattaatcagactgcaaatgattcc
aaggtcttgatagataatgttccagaaagttcttccttaattgaagagacaaacgaatgg
cctttggaaagcttttgtgaagaactttgcaatgacctttttaatccctcctgggaggtt
cgacatggggcaggtactggactcagagaaattcttaaagctcatgggaaaagtggtggt
aaaatgggagatagcactttagaagagatgattcagcagcatcaagagtggttggaagac
ttagtcattagactcctttgtgtttttgcattggacagatttggagactttgtttctgat
gaagttgtagcgccagttcgtgaaacttgtgctcaaacattaggtgtggttttaaagcac
atgaatgaaacaggagttcataagacagtggatgtgctgctgaaattattgacacaagaa
cagtgggaagttagacatggtggtcttctgggaataaaatatgctttggcagttcgtcag
gatgtgattaatactttattgcctaaagttttaactcgaataatagaaggactccaggac
cttgatgatgatgttcgagctgttgctgcagcgtctttagttcctgtagtagaaagcctt
gtctaccttcaaacacaaaaggtaccctccattataaataccttatgggattctcttctg
gaattagatgatctaacagcttcaacaaatagtattatgactctcctttcatctatgtta
acttaccctcaggtccagcaatgcagtattcagcagtcactcacagttttagtcccacgt
gtctggccattttttcatcacactatatcttcagttcgaagagcagcattggaaactctc
tttacattattatcaacacaggaccagaactcttcatcttggcttatacctatcctgtcg
gatatgctgcgacacatttttcagttttgtgttttagaaagcagccaggaaatcctggat
cttattcacaaggtctggatggaactgttaagcaaggcttcagttcagtatgtggtagca
gctgcttgcccatggatgagtgcttggctttgcttaatgatgcagccttctcatttacct
attgatttaaatatgctgctagaagtaaaagctagagccaaggaaaaaacaggtggtaag
gtacggcaaggtcaaatccaaaataaagaagtgcttcaggagtacattgcaggtgcagac
accatcatggaagacccagctaccagggattttgtagttatgagggccaggatgatggca
gctaagttgttaggagcagtctgttgctgtatttgtgatccaggtgtaaatatggtaaac
caagaaattaaaccagcagaatcccttggccagttactgctcttctatctgaattccaaa
tctgctttacagagaattagtgttgccttagtaatctgtgaatgggctgctttacaaaag
gagtgtaaagctgttaccctagctgtgcaaccgcgtttacttgatatcctttcagagtat
ttgtattatgatgaaattgctattccattcacacgaatgcagaatgaatgtaaacagttt
atatcgtcattagctgatgcacacattgaagttggtaatagagtaaacaacaatgtttta
acaatagatcaagctaatgacctggtaactactgtttttaatgaagtcacatcaactttt
gatttaaactctcaagtattacagcagttagatagtaaacggcatcaggtccaaatgaca
gttgcagagacgaaccaggagtggcaagtgttgcagctgagagtacatacgtttgctgca
tgtgcagttgtgagcttgcagcagcttccggaaaaactaaatcctatcataaaaccacta
atggaaacaattaaaaaagaagagaatacgctagtacagaattatgctgctcagtacata
gctaagcttctccagcagtgtacagcaaggacgccatgtcctaattcgaaagttattaag
aacctctgtagctctctttgtgtggacccatacctcactccctgtgtaacatgtccagta
ccaacacaaagtggccaggaaaattctaaaggatccaactcagaaaaagatggaatgcac
catactgtcaccaagcacagaggtatcattacactctataggcatcagaaagcagctttt
gctatcacaagccggcgaggtcctatccccaaagccatcaaagctcagatagcagatctg
cctgcaggaagtggtgggaatatcctggttgaacttgatgagggtcagaagccttaccta
gtacaacggagaggagctgaatttgccttaacaactatagtgaagcattttggtgctgaa
atggcagtgaacttgccacatctttgggatgctatggttggcccattgaagactatgatt
gacctaaataattttgatggaaagtccctcctggaaagaggggatgctcctgctcaagaa
ttggtaaattccctgcaagtgtttgaaatagcagcagcttcgatggattctgcacttcat
ccattgctggtacagcatttgcctcatctttatatgtgccttcagtaccccagcactgca
gtaaggcatatggcagctcgttgcataggtgttatgagtaaaatagctaccatggagaca
atgaatatttttttggagaaggtacttccttggttgggagcgattgatgacaatgtcaag
caagaaggtgcaattgaagcacttgcctgtgttatggaacaattggatgtcggtatcgtt
ccatatattgtccttttagttgttcctgtactgggaagaatgagtgatcagacagacagt
gtgaggttcatggctacacagtgctttgcgacactgattagactgatgccacttgaggca
ggcattccagaccctcccaatatgtcagaagaattaatccagttaaaagcaaaagaacga
cactttttagagcaattgttagatgggaagaagttagaaaattacaagatcccagtgcca
atcaatgctgaactcagaaagtatcagcaggatggtgtgaactggttagcctttctcaat
aagtataagcttcacggaattctgtgtgatgacatgggcttagggaaaacattacagtcc
atctgcatcctagcaggagatcattgtcagagggcccaggaatatgcaagatcgaaattg
gcagagtgtatgccacttccttccttggtggtttgtccaccaacattaacaggtcattgg
gtagatgaagtaggtaaattttgctccagagaatatcttaatccgttgcattatactggc
cctcccactgaaaggataaggttgcaacatcaagtaaaaaggcataatctgatagtagcc
tcatatgatgttgtgaggaatgacatagacttttttagaaatattaaatttaactactgt
attcttgatgaaggccatgtcataaaaaatggaaaaactaagttgtcaaaagcagtaaaa
caactgactgctaactataggattattctttctggaacaccaatccagaacaatgttttg
gagttgtggtcattatttgatttccttatgcctggatttttgggtactgaacgccagttt
gctgctcgatatggcaaacctatattagcgagtagggatgcacgaagctccagtcgagaa
caggaagcaggtgttcttgcaatggatgcactgcaccggcaagtcctgccgttccttctc
agaagaatgaaagaagatgttttgcaggatcttccacctaaaattattcaagactattac
tgtactcttagccctctccaggttcagctttatgaagattttgctaaatcgcgtgccaag
tgtgatgttgatgagactgtgtcttcagctgctctttcagaagaaactgaaaaaccaaaa
cttaaagctacaggtcatgtattccaggcattacagtatttacgtaaactctgcaaccat
ccagcgctggtcttgacccctcagcatccagaattcaagagcactactgaaaaactggca
gttcagaactcttctcttcatgatattcaacatgcccctaagctctcagccttgaagcaa
ttgctgttggactgtggtttgggaaatggcagttcttcggagagtggcacagagtctgtt
gtggctcagcacagaatactgatcttctgtcagcttaaaagcatgcttgatatagtagaa
catgatctgctcaagcctcacctgccatctgtcacttacttgagactagatggaagcata
cctcctgggcagcggcattccattgtttcccggtttaacaatgacccatccattgatgtt
cttctactcacaactcatgttgggggtctagggcttaatttgactggtgctgacactgtg
gtgtttgtggagcatgactggaaccctatgcgagatttgcaggccatggaccgggcccat
cgtattgggcagaaacgtgtggttaatgtttaccggttgataaccagaggaacactagaa
gaaaagataatgggcttgcagaaattcaagatgaacattgcaaataccgttattagccaa
gaaaattctagcttacagagtatggggactgaccagcttcttgacctgtttactctagat
aagggtgggaaagcagagaaggctgacagctccacttctggaaaagcaagcatgaaatca
gttctagaaaacctgagtgacctctgggatgccgagcagtatgactccgagtacaacctg
gagaccttcatgcgctctctcgagtga
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