Arvicanthis niloticus (African grass rat): 117712493
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Entry
117712493 CDS
T08817
Symbol
Pcdh7
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117712493 (Pcdh7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117712493 (Pcdh7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117712493 (Pcdh7)
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117712493 (Pcdh7)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117712493 (Pcdh7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
Cadherin_pro
LYRIC
KIAA1549
TMEM154
MLANA
EphA2_TM
Adeno_E3_CR2
Fibulin_C
Pox_A14
Motif
Other DBs
NCBI-GeneID:
117712493
NCBI-ProteinID:
XP_034364219
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All DBs
Position
7:60041026..60434455
Genome browser
AA seq
1255 aa
AA seq
DB search
MLRMRTTGWARGWCLGCCLLLPLCFSLATAKQLLRYRLAEEGPADVRIGNVASDLGIVTG
SGEVTFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPS
QSWVDLFEGRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERY
ELLQEPGGGSGSGEGRRLGPADSAPYPGGGGNSASGGGSGGSKRRLDAPEGGGGTSPSGR
SSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITD
VNDNSPRFEKSVYEADLAENSAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRL
DETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
GRIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQ
NKKKYFLHTSAPLDYETTREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVV
EVYFPENNIPGERVATVLATDADSGKNAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDRE
QTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGM
VTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDP
PRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLATDSDDGINADLN
YSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
ESVSNSTVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMM
ARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQA
VQDLPPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQ
SCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVAL
TGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDR
NRNLLNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVSTLTRREVYL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggatgcgaaccacgggatgggcgcgcggctggtgcttgggctgttgtctcctt
ctgccactctgcttcagcctggccacggccaagcagctgctccggtaccggctggctgag
gagggccccgccgacgtgcggatcggcaatgtggcctcggacctgggcatcgtgaccggc
tccggcgaggtgactttcagccttgagtctggctctgagtatctgaagattgacaacctc
accggcgagctgagcaccagcgagcggcgcatcgaccgagagaagcttccccaatgtcag
atgatcttcgacgagaacgaatgtttcctggacttcgaggtgtcggtgatagggccctcg
cagagctgggtggacctgtttgagggtcgggtcatcgtgctggacatcaacgataacacg
cccaccttcccgtcgccagtactcacgctcacggtggaggagaaccggcctgtaggaacg
ctctacctgctgcccacggccacggatcgtgactttggtcgcaatggcatcgagcgctac
gagctgctccaggagcccgggggtggcagtggcagcggcgagggaaggcgcttggggccg
gcggacagcgccccctacccagggggcggcgggaacagcgcgagcggcggcggctccgga
ggctccaagcggcggctggacgcgcctgagggtggcggcgggactagccccagtggccga
agcagtgtgttcgagctgcaggtggcagacactccagacggcgagaagcaaccgcagctc
atagtgaagggggcgctggaccgggaacagagagattcctatgagctgaccctccgagtg
cgggatgggggcgacccacctcgatcctcgcaggccatcttgcgggtgcttatcaccgac
gtgaatgacaacagtccccgcttcgagaagagcgtgtatgaggctgacctggctgagaac
agcgctccgggcacccccatcctacagttgcgtgccaccgatttggacgtaggggtcaat
ggacagatcgaatatgtatttggggctgccaccgagtcggtgagacggctactacgcctg
gatgaaacgtcgggctggctcagtgtcttacaccgtatcgaccgcgaggaagtgaaccag
ttgagattcacagtaatggcccgtgaccgcgggcagccccccaagaccgataaggccacc
gtggttctcaatatcaaagacgagaacgataacgttccctccatcgaaatccgcaagata
gggcgcatcccgcttaaggacggggtggccaacgtggccgaagacgtcctggtggacacc
cccatcgccctggtacaggtgtccgaccgagaccaaggcgagaacggagtagtcacctgt
accgtagtcggagatgtgcctttccagcttaagccagccagcgacacagagggcgatcag
aacaagaaaaagtacttcctgcacacatcggccccactagactatgagaccacccgagag
ttcaacgtggtcatagtagctgtggactccggtagccccagcctctccagcaacaattcc
ttggtggtcaaggtgggagacaccaatgacaaccctccagtctttggccagtctgtggtt
gaggtttactttccagagaacaacattcctggtgagagggtagccacggtgctggcgaca
gacgctgacagcgggaagaatgcagagatcgcctactcgctggactcttcagtgatgggg
acttttgccatcgatcccgattctggggacatcctggtcaatacagtactggaccgggag
cagactgacaggtatgagtttaaagttaatgccaaagacaaaggcattcctgtgctgcaa
ggcagcaccacggtgattgtacaggtggctgataaaaatgacaatgaccctaagtttatg
caggatgtctttaccttttatgtgaaggaaaacttgcaacccaacagccctgtgggtatg
gtcaccgtgatggatgctgacaagggacggaatgcagagatgagcctgtacatagaggag
aacagtaacattttttctattgaaaatgacacagggaccatttactccacaatgtctttt
gacagggaacatcagactacatacactttcagagtgaaggctgtggatgggggagatcct
cccaggtcggccacagccaccgtctctctctttgtgatggatgaaaatgacaacgctccc
acagttacccttcccagaaacatttcctacacgttgctgccaccttcaagtaatgtcagg
acagtagtagctacagtgttggcaactgacagtgatgatggcatcaatgcagacttgaac
tacagcattgtgggagggaatcctttcaagctgtttgagattgattccaccagtggtgtg
gtttccttagtgggaaaactcacccaaaagcattatggcttgcacaggctggttgtgcaa
gtgaatgacagtggccagccttcccagtccactacgactttggtgcatgtatttgtcaat
gaaagtgtttccaattcaactgtgattgactctcagatagtccgaagtttgcatacccca
ctcacccaggatatagctggtgacccaagctatgaaattagcaaacagagactcagtatt
gtcattggggtggttgctggcattatgacagtgattctgatcattttaattgtcatgatg
gcaaggtactgcaggtccaaaagtaaaaatggctacgaagctggtaagaaagaccatgaa
gacttttttacaccccagcagcacgacaaatctaaaaagcctaaaaaggacaagaaaaac
aaaaaatctaagcagccactctacagcagtatcgtcactgtcgaagcttctaaaccaaat
ggacagaggtatgatagtgtcaatgagaagctgtcagacagcccaagcatgggccgatac
cgatctgttaatggtgggcctggcagtcccgacctggcaaggcattacaaatccagttcc
ccattgcctactgtccagcttcacccccagtcaccaactgcagggaaaaaacaccaagct
gtacaagatctaccaccagccaacacatttgtgggagcaggagacaacatttcaattgga
tcagatcactgctctgagtacagctgtcaaaccagtaacaagtacagcaaacagccattt
cgtagagtgacgttttctgttgtgagtcagcctcaggacccacatcaggggtcactgcag
agttgctatgacagcgggctggaggagtcagaaacaccaagcagtaagagttcatcaggg
ccaagactgggtgcccttccactcccagaggacaactatgagaggaccacgccggatggc
agtgttggtgaggcagagcatatggaaaatgattcaaggcctcttccggatgtagcgctg
actggcaagtgcacccgtgaatgtgatgagtatggccattcagactcctgctggatgcca
gtgcgcacttccccagagaggaagaagagccagcccaaactctccactttcatgcctgtt
gatgaacgaggaagccaagaaaagctggccaatggcgaggctgccatcatgggtgaccgc
aacagaaacctcctgaacaaaaagttgacctcatcctatgagaccttcagtgcagctagt
ttcagcaaaaatgaggaagccaaccctgaggatatccctttaacaaaaacaggggaatat
aagccatctcctgtcagcactctcactagaagagaagtttatctgtag
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