Arvicanthis niloticus (African grass rat): 117712599
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Entry
117712599 CDS
T08817
Symbol
Limch1
Name
(RefSeq) LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117712599 (Limch1)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
117712599 (Limch1)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
117712599
NCBI-ProteinID:
XP_034364479
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All DBs
Position
7:68241932..68538833
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AA seq
1623 aa
AA seq
DB search
MAFPALGLEVLQPLQPEPPPEPAFAEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNTILFLRGCKELGLKESQLFDPSDLQDTSNRVTAKNLDYS
RKLKNVLVTIYWLGKAANSCASYSGTTLNLKEFEGLLAQMRKETDDIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHR
KLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWST
ATSPLGGERPFSYPETIEEEGSEAGSPTEEDPSSQMGPDGKPACGLEAPPSNGEEQSPED
VAAVPAAVPEDRDAVESQKRRRLEQAGIKVMPAAQRFASQKQWSEEKEAIRDIILRKENP
FLTHQCGKDSESEDEAACLLPDLEKDDFAARRARMNQSKPMVPLNQLLYGPYRKNDAERV
GGSKQLSKGQSGKKNLSYKRDQGQRKDVNTVVACGLQTQEGEPLETNFRKAPDLQKDDLA
QRRIQSRITSHREAQSFIKLSGITEADLETWERLKVSGETRDGDARNTCAPEPSPEIDAE
TAIRDDFASRKARAYKKASGPRQKFVHFGPVTEIDQQTWKRLSIGKAGPRDNVEVLSHSS
QSRTSSGSPPATATFGLKEEQMLSPHSDCRIVPSGTDGCLKKAPWLAPVPESLEEQVCIQ
SNNPKTEEVTPTQLPQDGREQNEEVVQKEPETLPRVKEPEECSGPLACPLASEWEPLGTE
VKLEKKTAPSWSGCGLKGQNKMADSXKDGMMTRRTEMLSRHPRSKPPHFLLHSSRELXES
AKGIPRNDQRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD
KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR
ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNISSFPTD
PSPMKYLRQQSLPPPKFTATVETTITRTGVPESSAATGTGSPSKTITPNTVPMLTPRPYS
QPRNSQEVLKTFKVDGKASVNGETAHGDEEGTEKEGPAEVASGPSLTKSQMFEGVAMVHG
SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERSGTRDTEPDSAEPP
HFTTTVTRCSPTVALMEFSPNPQLKNEVPEEQDQKKPENEMSGKVELVLSQKVAKPKSPE
PEATLTFPFLDKMPETNQLHLPNPNSQADSPSSEKSPMSTPFKFWAWDPEEERRRQEKWQ
QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQ
LSTSSSVTEGSGTRNKMDLESCQDKEKERRQKSPFQENDSDSLLKAGEGDLPEEHSSLIQ
SPSANSENSVSKGIHQDQQPEAEAGAPHCGTNPQLAQDPPWNQQIPNTSAPMSEDVKPRT
LALEKSVNHQIESPGERRKKSPRENFRAGPLSPCSPTPPGQSPNRSISGKKLCSSCGLAL
GKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQP
TTL
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggctttccccgctctcggtctggaagtccttcaacccctgcagcccgaaccacctccg
gagcctgccttcgccgaggcacagaagtggatcgagcaagtcactggtcgaagttttggt
gacaaagacttccggacaggactagaaaatggaatccttctttgcgagttgctgaatgct
ataaagccaggacttgttaaaaagatcaatagattgcctacccccattgcaggattggac
aataccatcttattcttgagaggttgtaaagagcttggacttaaagaatctcaactcttt
gacccgagtgacctccaggatacttccaacagggtcactgccaagaacctcgattatagc
aggaagctgaaaaacgtgttagtgaccatttactggctggggaaagctgcaaacagctgc
gcatcctatagtggaaccacactgaacctgaaggagtttgaagggctgttggctcagatg
cgaaaggagactgacgacattgagagtcctaagcgcagcatccgagacagtggctacatc
gactgctgggactctgaacgcagtgactccctctctcctcctcgccacggccgggatgac
tcctttgacagcctggattctttcggctcgcgctccaggcagacaccttcaccagatgta
gttctcaggggaagcagtgatggaagaggaagcgattctgaatcagacttgcctcaccgg
aagttgccagatgtgaagaaagatgatatgtccgcacgacgaacttctcatggtgagccg
aaatcagcagtgccttttaaccagtacctcccgaacaaaagcaaccagaccgcctatgtc
ccagcacctctgagaaagaagaaggcggagcgggaggaatacaggaagagctggagcacg
gccacctcccccctgggtggggaaaggcccttcagttaccctgaaaccatagaggaggag
ggaagtgaagcagggtctcccactgaagaggaccccagcagccagatgggccctgatggg
aagcctgcctgtgggttagaagctcctcccagcaatggtgaggagcagtctcctgaggat
gttgctgcagtgccagctgctgttcctgaagacagagatgctgtggaaagccaaaagcgc
agaaggctggagcaagctgggatcaaggtcatgcctgcagcacagcgctttgccagtcaa
aagcaatggagtgaagagaaagaagctattcgtgatataatcctccggaaagaaaaccct
ttcctgacccaccaatgtggcaaagattcagagtcggaagatgaagctgcatgtctactg
cctgaccttgagaaagatgactttgccgcaaggagggcaaggatgaaccaaagcaagcca
atggtgccacttaatcaactgctctatgggccttaccgaaagaatgatgcagagagggtg
ggtggcagcaaacagctctcaaagggacagtcaggcaagaagaatctaagctataaaaga
gaccagggccagaggaaagatgtgaacacagttgtggcctgtggcctgcaaacccaggag
ggtgaaccactggaaacgaatttcaggaaagcaccagatcttcagaaggatgacctggcc
cagagaagaatccagagcagaattacctctcaccgtgaggctcagagcttcatcaaactc
tctgggattacagaagctgacctggagacttgggagagattgaaagtatcgggagagaca
agggatggagatgctcggaacacctgtgcccctgagccctcaccggaaatcgacgcagaa
accgccatccgggatgactttgccagtcgtaaagcaagggcctataagaaagcatctggc
cccaggcaaaaatttgtacactttgggcctgtgacagagatagaccaacaaacttggaag
cggctcagcattggcaaggcggggcctagggacaatgtggaggttctcagtcatagcagc
cagagccgaacttcctctgggtcacctcccgctactgctacttttggcttaaaggaagaa
caaatgcttagtccacacagtgactgcaggatagtgccttctggcacagatggctgtctc
aaaaaggccccatggctggcgccagtgccggagtctctggaagaacaggtctgcattcag
agcaacaacccaaagacagaggaagttacacccacacagctgccacaggatggcagagaa
caaaatgaagaagttgttcaaaaagagcctgagacgctgccaagggtaaaagaaccagag
gaatgcagcggacccctagcatgtcctctggcctctgagtgggagcccttgggaacagaa
gtgaagttggagaagaaaacagctccttcctggagtggctgtggactgaaaggccagaat
aagatggctgattcatgaaaagatggtatgatgaccaggagaactgagatgctctctaga
catcccagatccaaaccaccacatttccttttacacagcagtagggaactannggaatct
gccaagggtatacccaggaatgatcagagatacggtccaagaactcctgtgtcagatgac
gcagagagcacgagtatgtttgacatgcggtgtgaggaggaggcagcggtgctgccgcac
agcagggcccgccaagagcagctgcagctgataaataaccagctgagggaagaggacgac
aaatggcaagatgacctggctcgctggaagagccgtagaagaagcgcttctcaggactta
atcaagaaagaggaagaaagaaaaaaaatggagaagttgatgtccggagaagatgggaca
agtgaacggaggaaaagcatcaaaacttacagagaaattgtccaagaaaaagagcggaga
gagcgggagcttcacgaggcgtacaagaacgcacggtcacaggaggaggccgaggggatc
ctccagcagtacatcgagaggttcaccatcagtgaggctgtcctcgaacgcttggagatg
ccaaaaattctggaaagaagccattcaacagagccaaacatatcctccttcccgaccgac
cccagccccatgaaatacctacggcagcagtcactgcccccgcccaagttcactgccacg
gttgagaccaccatcactcgcaccggtgtcccagagagcagcgcagcaacaggcaccggg
tctccaagcaaaaccatcactccaaacacagtgcctatgctgacacccaggccttactcc
cagcccagaaactctcaagaggttctgaagacttttaaggtagatgggaaagccagcgtg
aatggagaaacggcccatggagatgaggaaggaacagaaaaagaaggccctgcagaggtg
gcctctggcccttccttaaccaagtcccagatgtttgaaggtgtggccatggtgcacggc
tctcccgtgcaagtgaaacaaggcagcaacagcatcgagatcaacatcaagaagccaaat
tctgctccccaggaactgacagcagcctctgaggaaactgaatcgaatggtcaagaggat
gaggatggtgaagagaggtcagggacccgggatacggagccggactctgcagagccacca
cattttacgacaaccgtgactcggtgcagcccaacggtggccttgatggagttttcaccc
aacccacagctgaagaatgaggtgccagaagaacaagaccagaagaagccagaaaatgaa
atgagtgggaaggtggagttagtgttgtcacagaaggtggcaaagccaaaatccccagaa
ccggaagcaaccttgacgtttccatttctcgacaaaatgcctgaaaccaaccaactacat
ttgccaaatcccaattctcaagcggattctccaagcagtgaaaaatcccccatgagcaca
ccgtttaagttctgggcatgggacccggaagaggagcgcaggcgacaggagaaatggcag
caggagcaggagcgtctactccaggagaggtatcagaaggagcaagacaagctgaaggag
gagtgggaaaaggcccagaaggaggtagaagaagaagaacgcagatactacgaggaggag
cgtaagataattgaagacaccgtggttccattcactatttcctcgagttctgcagaccag
ctgtctacatcctcatctgtaactgaaggcagcgggacgaggaataagatggacttggaa
agctgtcaagacaaagaaaaagagagaagacagaagtcacctttccaggagaatgacagt
gactcattgctcaaagctggagaaggtgatctgccagaggagcacagcagcctaattcaa
agtccttcagctaactctgaaaactccgtgtcaaaaggaatccatcaggaccagcagcca
gaggcagaggctggggccccacactgtggtacaaacccacagctagctcaggatccacct
tggaatcaacagataccaaacacatcagcacccatgtcagaagatgtgaagcccagaacc
ctggccctagagaaaagtgtcaatcaccagatcgagtctccgggggaaaggcggaagaaa
agccctcgagagaacttccgggctgggcccctgtccccctgctctcccacccctcccggc
cagtctccaaacaggtctataagcgggaagaagctgtgctcctcctgtggacttgctttg
ggtaaaggcgccgcgatgatcatcgagaccctgaacctctactttcacatccagtgtttc
aggtgcggcatttgtaaaggacagctcggggacgccgtgagcggaacagacgttaggatt
cgcaacggtctcctaaactgtactgactgctacatgcgatccagaagtgccgggcagcct
acaacactgtga
DBGET
integrated database retrieval system
