Arvicanthis niloticus (African grass rat): 117713482
Help
Entry
117713482 CDS
T08817
Symbol
Trim38
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38
KO
K12014
tripartite motif-containing protein 38 [EC:
2.3.2.27
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
117713482 (Trim38)
Enzymes [BR:
anu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117713482 (Trim38)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117713482 (Trim38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_3
TRAF3_RING
DUF4407
zf-C3HC4_2
PEPcase_2
Motif
Other DBs
NCBI-GeneID:
117713482
NCBI-ProteinID:
XP_034365561
LinkDB
All DBs
Position
8:complement(38119495..38129870)
Genome browser
AA seq
473 aa
AA seq
DB search
MGSDFSTVKIRKVSSCXICKAIISHLVGINCGHSYCKSCIQSYFCSVSPKTGWKMLGCPL
CSSPFSLESFRPNKELEIIIGMIKGMEEQDHDMVCEEHEEKXSCFCEDDAQLLCWRCYWE
DRHKGHXLVGMKYVYQNXKEKLKNIVTKLRELQDNLEVQIHFITSQISAWKDAREDQRQT
IKSNFKNLQSFLQEEEKFYLWRLENEEKQTLMQLKSSEVNTQQMXYERTECQIQELKAKC
QGSAQKLLQDVKNTLSRCEAVKLSLLKTDPLKVQTKCNVSELYFDVKTVLRCHQDRVSVI
LDPSTAHLDLALSRGGRLATYKRFHRNLQASSKRFYGLHKPCVLGCEGDTSGRYYFKVSV
EKAASWDVGVCLENMXRGFNMKKEPEFGFXTIRLSEENGLEALTSTPTPLLHXSENSQLV
GFFVEYEAGVVSFYHVTTGSHIFTFPRASFWDTLRPFFWVYQHSPLFLPTINN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagactttagcacagtgaagataagaaaggtctcttcttgtnccatctgcaag
gccataatatctcacctagtgggaatcaactgtggacacagctactgcaaatcctgcata
cagagctatttttgcagtgtcagcccaaagacaggatggaagatgctgggatgtcctttg
tgtagtagtccgtttagcttagagagtttcaggcccaacaaggagctagaaatcataatt
ggtatgatcaagggaatggaagagcaggatcatgacatggtatgtgaggaacatgaagag
aaanctagttgcttttgtgaagatgacgctcagctcctctgctggaggtgttattgggag
gatcggcacaaaggtcacnncttggttggtatgaaatatgtgtaccagaactaaaaggaa
aaactgaagaacatcgtgacaaaattgcgtgaactccaagataatcttgaagttcaaata
catttcataacaagccaaataagtgcctggaaggatgccagagaggatcaaaggcaaaca
atcaaatctaacttcaagaatctccagagttttctacaggaagaagagaagttttatctt
tggaggttggagaatgaggaaaaacagacgctgatgcagctgaagagcagcgaggtcaat
acacagcagatgtagtatgagagaactgaatgccaaattcaagaactgaaggcaaaatgt
cagggctcagcccagaaattgctacaggacgtgaaaaacactttgagcaggtgtgaggct
gtgaagctaagcctgctgaagactgatcccctgaaggttcaaactaaatgtaatgtgtct
gagctttactttgatgtgaagacagtattaagatgtcaccaagatagggtcagtgtgatc
ctggaccccagcacagctcatcttgacttagctctgtctagaggtggaagactagcgact
tacaaaagattccatagaaatcttcaggcttcttccaagaggttttatggtttacataaa
ccctgtgtcctgggctgtgagggcgatacttcaggaagatattactttaaagtctctgtc
gagaaagcagccagttgggatgtgggagtctgtttagagaatatgtagaggggctttaac
atgaagaaggagcctgagtttggattctgaaccattaggttgtctgaagagaatggcctg
gaagctctcacttctaccccgactcctctccttcatncgagtgaaaattcccagcttgtg
ggattttttgtagagtatgaggctggagttgtatcgttttaccatgtaactactggctcc
cacatcttcactttccctagggcttctttctgggatactctgaggccctttttctgggtt
tatcaacattctcctttgttcttgcctaccataaataattaa
DBGET
integrated database retrieval system
