Arvicanthis niloticus (African grass rat): 117713508
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Entry
117713508 CDS
T08817
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117713508 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117713508 (Patl1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117713508 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
117713508 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117713508
NCBI-ProteinID:
XP_034365605
LinkDB
All DBs
Position
1:120120131..120150650
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQTPMFRPDTTHLHPQ
HRRLLYQRQLQSRNQHRNLNGTGDRGGHRASHQDYLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDSQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSATAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFV
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacatttggatcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagctc
cctgtggcagctgatgaacaaacaggcaatggagagagagatgagatggatttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtgcagaccaggccagttttacaacctcaaccaggaagt
ctaaattctagcatctgggatggatctgaagttctgaggcgaattcgaggaccactactt
gctcaggaaatgcctacagtatctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgagacctttctgagcgagctttaccaaggcggtcaacatcacct
attattggaagtcctcctgttagagctgttcctataggcactccacctaagcagatggct
gttcccagcttcaaccaacagattctgtgtccgaagcctgttcatgttcggcctccaatg
ccaccacggtatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctagtgttcctcctgtactcagtccc
ctgcagagagcacagcttcttgggggagcacagctacagcctggacgaatgtctcccagc
cagtttgcacgggtccctggatttgttggtagcccactggctgccatgaatcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccctgctacaccacctccacagcagcatcctcctggcccaggacctcaccta
caaaacctaagacctcagaccccaatgtttagaccagacacaactcaccttcatccacag
caccggcgcctgttgtatcagaggcagctgcagagtagaaatcagcatcggaatctcaat
ggtactggagacagaggaggtcaccgggccagtcatcaggattatctccggaaggatcca
tatgctaatctaatgttgcagcgagagaaggattgggtttctaaaatccagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaagaaatacaaggtgatggccctaagaaggagcgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttataagcctgtgcagtttgagggc
tctttggggaagcttactgtctctagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcggagtgaggatgatgaaacgaaagaaaaacaagttcgggataagagaaga
aaaacccttgtcataattgagaaaacctatagtttactccttgatgtagaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctcatggatgaaagaaagcac
aagatctgtagcatgtatgacaacctgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagattatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagaacaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggattcacaagatgaggtgctgccatgcttactgagtcccttc
tcccttcttctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcaactgcaccagcaccctccaattctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactgagccgtggggaagacctacag
agttcagatcctgctatagagtcaacgcaaaataaccaatggacagaggtgatgttcgtg
gcaacccgagaacttctacggatcccccaagcagccctggctaagccaatctctataccc
acaaatctggtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactgcagctggttcaggggatacgataa
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