Arvicanthis niloticus (African grass rat): 117713664
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Entry
117713664 CDS
T08817
Symbol
Atxn1
Name
(RefSeq) ataxin-1
KO
K23616
ataxin-1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04330
Notch signaling pathway
anu05017
Spinocerebellar ataxia
anu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117713664 (Atxn1)
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
117713664 (Atxn1)
05022 Pathways of neurodegeneration - multiple diseases
117713664 (Atxn1)
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Motif
Pfam:
ATXN-1_C
AXH
Motif
Other DBs
NCBI-GeneID:
117713664
NCBI-ProteinID:
XP_034365952
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Position
8:17443412..17851351
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AA seq
790 aa
AA seq
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MKSNQERSNECLPPKKREIPATSRPSEEKATALPSDNHCVEGVAWLPSTPGSRSHGGGRH
GPAGTSGEHGLQGMGLHKALSAGLDYSPPSAPRSVPTANTLPTVYPPPQSGTPVSPVQYA
HLSHTFQFIGSSQYSGPYAGFIPSQLISPPGNPVTSAVASAAGATTPSQRSQLEAYSTLL
ANMGSLSQAPGHKVEPPPQQHLSRAAGLVNPGSPPPTQQNQYIHISSSPQSSGRATSPPP
IPVHLHPHQTMIPHTLTLGPSSQVVVQYSDAGGHFVPRESTKKAESSRLQQAMQAKEVLN
GEMEKSRRYGASSSVELSLGKASSKSVPHPYESRHVVVHPSPADYSNRDTSGVRGSVMVL
PNSSTSSADLEAQQATHREASPSTLNDKSGLHLGKPSHRSYALSPHTVIQTTHSASEPLP
VGLPATAFYAGTQPPVIGYLSGQQQAITYAGGLPQHLVIPGTQPLLIPVGSPDMDTPGAA
SAIVTSSPQFAAVPHTFVTTALPKSENFNPEALVTQAAYPAMVQAQIHLPVVQSVASPAT
ASPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISSDLKIDSSTVERIEDSHSPG
VAVIQFAVGEHRAQVSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL
TLKNLKNGSVKKGQPVDPASVLLKHAKTDSLAGSRHRYVEQENGINQGSAQVLSENGELK
FPEKIGLPAASFLTKIEPSKPTATRKRRWSAPETRKLEKSEDEPPLTLPKPSLIPQEVKI
CIEGRSNVGK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccaaccaagagcggagtaatgaatgcctgcctcccaagaaacgtgagatcccc
gccaccagccggccctctgaggagaaggccactgctctgcccagcgacaaccactgcgtg
gagggtgtggcatggctccccagtacccctggcagccgcagccatgggggtgggcggcat
gggccagcagggacttctggggagcatggtttacaaggaatgggtttacataaagcactg
tccgcagggctggattactccccacccagtgcccccaggtcagtccccacagccaacacg
ctgcccaccgtgtaccctcctcctcagtcagggaccccagtgtctcctgtgcagtatgcc
cacctttctcatactttccagttcattgggtcctcccaatacagtgggccttacgcaggc
tttatcccttctcagctgatctccccaccaggcaacccggtcaccagtgcggtggcctcc
gctgcaggggccaccacaccatcacagcgctcccagctggaggcatattccaccctgctg
gccaacatgggcagtctgagccaggcaccaggacacaaggttgagccccctccacagcag
cacctcagcagggctgcgggattagtcaacccagggtcccctccacccacccagcagaac
cagtacattcatatttccagctcgccacagagctccgggcgggcaacatctcctccaccc
atcccggtccacctccatccccatcagacgatgatcccgcacacactcaccctggggcct
tcatcccaggtggttgtgcaatacagtgatgctggaggccactttgttcctcgagagtcc
accaaaaaagcagagagcagcaggttgcagcaggctatgcaagccaaggaggtcctgaat
ggggagatggagaagagccggaggtatggggcatcatcttctgtggagctgagcctgggg
aaggcaagcagtaagtcagtgcctcatccctatgagtccaggcatgtggtggtccaccca
agcccagcagactacagcaatcgtgatacctccggggtccgtggatctgtgatggtcctg
cccaacagcagcacatcctcagcagacctggaggcacagcaggccacgcatcgagaggcc
tccccatccaccctcaatgacaagagcggcctgcacctagggaagcccagccacaggtcc
tatgcgctgtccccccacacggtcattcagaccacacacagtgcatcagagcctctcccg
gtgggcctaccagccacggccttctatgctggcactcaacctcctgtcatcggctacttg
agcggccagcagcaagcaatcacctacgctggcggtctgccccagcacctggtgatccca
ggtacccagcctctgctcatcccagtgggcagccctgatatggacacacctggggcagcc
tcggccatagtgacgtcatcaccccagtttgctgcagtacctcacacgtttgtcaccacc
gccctgcccaagagcgagaacttcaacccggaggctctggtcacccaggctgcctaccca
gccatggtacaggcccagatccacctgccggtggtgcagtctgtggcatcccctgccaca
gcgtcacccacgctgccgccatatttcatgaaaggctccatcatccagctggccaacggg
gagctgaagaaggtggaggacctgaagacggaagatttcatccagagtgcagagattagc
agtgacctcaagattgactccagtactgtggagaggatcgaggatagccacagccccggt
gtggccgtgatacagtttgctgttggtgaacaccgagcccaggtcagcgttgaagttctg
gtagagtatcctttttttgtatttggacagggctggtcatcctgctgtcctgagcggacc
agccagctctttgatctgccgtgttccaaactctccgttggagacgtctgcatctcgctc
accctcaagaacctgaagaatggctctgttaaaaagggccagcctgtggaccctgccagt
gtcctgctgaagcacgcaaagaccgacagcctggctggcagcagacacagatacgtggag
caggaaaacggaatcaaccagggaagcgcccaggtgctctctgagaatggcgaactgaag
tttccagaaaaaatcggattgcctgcagcatccttcctcaccaaaatagaaccgagcaag
cccacagccacgaggaagaggaggtggtcggccccggaaacccggaaactggagaagtcg
gaggacgagccacctttgactcttcccaagccttcgctcattcctcaggaggttaagatc
tgcatcgaaggccgatctaacgtgggcaagtag
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