Arvicanthis niloticus (African grass rat): 117713683
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Entry
117713683 CDS
T08817
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117713683 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117713683 (Ddx46)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117713683 (Ddx46)
Spliceosome [BR:
anu03041
]
Complex A
U2 snRNP components
U2 related factors
117713683 (Ddx46)
Complex B
117713683 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117713683
NCBI-ProteinID:
XP_034365984
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All DBs
Position
8:complement(8384527..8431118)
Genome browser
AA seq
1031 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKSKKAENRSRS
KEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQL
AEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRISE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTNKGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtctcgccactaccgcaaacggtcagcatcacgaggtcgctctggaagt
cggtctaggagtcgctcaccctccgacaaaagaagcaaacgtggagatgacagacgctct
aggagtagagatagagacagaaggagagagaggtcccggagtagggacaaaagacgatct
cggtcaagggacaggaagcgcctgaggcgttccagaagtagagagcgggacagaagccga
gagcgaagaagatctcgcagccgagatagaaggcggtcaaggagtcgaagccggggcagg
cgatcccggtcctccagtcctggcagcaaaagcaagaaggctgagaataggtctaggtcc
aaagagaaagcagaaggtggggacagctccaaggagaagaaaaaggacaaggatgacaag
gaggatgagaaagagaaggatgctgggaactttgaccagaataagctggaagaagaaatg
agaaaacggaaagaaagagttgaaaagtggcgggaagaacaacgtaaaaaggcgatggag
aacataggggagctgaagaaggagattgaggaaatgaaacaggggaagaagtggagcttg
gaagatgacgacgatgatgaagatgatcctgctgaggctgagaaggaagggaatgagatg
gaggacgaggaactggaccctttagatgcctacatggaggaggtgaaagaagaggtcaaa
aagttcaacatgaggagcgtgaaaggtggcggaggaaacgagaagaagtctgggccaaca
gtcacgaaagttgttactgtggtaacaaccaagaaagcagtagtagattctgataagaag
aagggagagctgatggagaatgaccaggacgccatggagtattcctcagaggaggaagaa
gttgaccttcaaacggccctcacaggctaccagacaaaacagagaaaacttctagaacca
gtagatcatggaaaaattgaatatgagccattcagaaaaaacttttatgttgaagttcca
gaattagcaaaaatgtctcaagaagaggtgaatgtgtttcgattggaaatggagggcatt
acagttaaaggaaaaggttgccccaaaccaattaaatcttgggtccagtgtggaatttct
atgaagatactaaattccctcaaaaagcatggctatgaaaagcccacaccaatccaaact
caagcaattcctgctataatgtctggacgagatttgattggcattgccaagacaggaagt
ggaaaaaccattgcttttcttttgcccatgtttagacacatcatggatcagaggtcatta
gaagaaggagagggaccaatagctgtcatcatgactccgactcgagagctggctttacaa
atcactaaagaatgtaagaagttttcgaagaccttgggactgagagtggtctgtgtgtat
ggagggactggaatcagcgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgtacacctggccgaatgattgacatgttagcagctaacagtggtcgggtcacaaatctt
cggagagtgacatatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgtccgtcctgaccggcagacagttatgttttca
gccactttccctagagctatggaggcgttggcccgcaggatcctgagcaaacccattgaa
gttcaggttggaggcaggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagaaaagaaattcttgaaattactggagcttttagggcattatcaggagtcagga
tcggtcattatatttgtggataagcaagaacatgctgatggtcttctgaaggacttgatg
agagcatcgtacccttgcatgtctcttcacggaggtattgatcaatatgacagggacagt
atcataaatgactttaagaatggaacctgcaagcttcttgttgccacgtctgttgccgct
cgaggtctcgatgtgaaacatctaattcttgtagtgaattacagctgccccaatcattat
gaagattacgtgcacagagctgggcggactggaagagcgggcaacaagggttatgcctac
accttcatcacagaggatcaagctcgatatgctggtgacatcattaaagctcttgaattg
tcagggacggcagttcctcctgacctagaaaaactctggagtgacttcaaagatcaacaa
aaagctgaaggaaaaataattaaaaagagcagtggcttctccggcaagggattcaagttt
gatgagacagagcaggcgttagctaatgagaggaaaaagctacagaaagctgctcttggc
ctgcaggactctgacgacgaggatgctgcagttgatattgatgaacagattgaaagcatg
tttaattcaaagaagagagtaaaggacatggctgcacccggcacatccagtgtacctgct
ccaacggcaggcaatgctgagaagctagagattgccaagagattggctcttagaatcaac
gctcagaagaacctgggcatcgagtctcaggatgtgatgcagcaggccaccaatgccatc
ctcagaggtggtactattctggctcccaccgtgtctgcgaaaaccattgcagagcagctc
gctgagaagatcaatgccaagctcaactacgtgcctttggagaaacaggaagaagagaga
caggagggtgggcagagcgaatctttcaagagatacgaggaagaattagaaattaatgac
ttcccacagacggcgaggtggaaagtcacctctaaggaagccttgcagaggatcagtgaa
tactctgaagctgccatcactatcagagggacctactttcctcctggcaaagagcccaaa
gaaggggagcggaagatctacttggcaattgagagtgccaacgaactggctgtgcagaaa
gcaaaggcagagatcaccaggctcataaaagaggaactgatccgactgcaaaattcatat
caaccaaccaacaaaggacgatacaaagtattataa
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