Arvicanthis niloticus (African grass rat): 117715124
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Entry
117715124 CDS
T08817
Name
(RefSeq) contactin-6
KO
K06761
contactin 3/4/5/6
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117715124
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
anu00537
]
117715124
Cell adhesion molecules [BR:
anu04515
]
Immunoglobulin superfamily
Contactins
117715124
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
anu00537
]
Others
117715124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
Sp38
Pur_ac_phosph_N
C2-set_3
Ig_4
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
117715124
NCBI-ProteinID:
XP_034367678
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All DBs
Position
9:43573691..43907791
Genome browser
AA seq
1027 aa
AA seq
DB search
MRLLWKLIILLPLINSCAGEGRFSRPIFIQEPQDVVFPLDLSRSEIILTCTANGYPSPHY
RWKQNDTDIDFSMTYHYRLDGGSLAISSPRTDQDIGIYQCLATNPVGTILSRKAKLHFAY
IEDFETKTRSTVSVREGQGVVLLCGPPPHFGELSYAWTFNDNPLYVQEDKRRFVSQNTGN
LYIAKVEPSDVGNYTCFVTNKDAHRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETIQAA
KDSSVKLECFALGNPVPDISWRRLDGSPMPGKVKYSKSQAILEIPKFQQEDEGFYECVAG
NLRGRNLAKGQLIFYAPPEWERKIQNTYLSIYDSLFWECKATGNPNPSYTWLKNGERLNT
EERIQIENGTLIITMLNVSDSGIYQCAAENKYQTIYANAELRVLASPPDFSKNPIKKISV
VQVGGDISIECKPNAFPKASISWKKGAENLKQSKRVFFLEDGSLKIVNVTRSDAGSYTCV
ATNQFGNGKSSGSLIVKEKTVITVPPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGD
LIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGP
PEDVKVEHISSTTSQLSWRPGPDNNSPIQIFTIQTRTPFSVGWQAVATVPEILNGQTYNA
TVVGLSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASVPSVAPVNINGGGGSRSELVIT
WESIPEELQNGEGFGYIIMFRPVGSATWMKERVALVESSKFIYRNESIMPLSPFEVKVGV
YNNEGEGSLSTVSIVYSGEDEPQLPPRGTSVQSVSASEMEVSWNAIAWNRNTGRVLGYEV
LYWTDNSKESMIGKIRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSPPVNVTTKK
SPPSQPPANIAWKLSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSKTHVLETNNTSA
ELLVPFEEDYLIEIRTVSDGGDGSSSEEIRIPKMSSLSSTGVQILKPSTQFLSMAGVFYC
FAIQPFS
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgctatggaaactgataattctgctgccactcataaactcttgtgcaggtgag
ggtcgtttcagtcgtcctatttttattcaggagccacaagatgttgtttttcctttggat
ttatctagatctgaaattattctgacttgtactgcaaatggatacccttctcctcattac
aggtggaaacagaatgatacagatattgacttcagcatgacttatcactataggttggat
ggaggcagtttggccatcagcagtcccagaacagatcaagatattggcatatatcagtgt
ctggccactaatcctgtgggcaccattctgagtagaaaagcgaaactgcactttgcatat
attgaagactttgaaactaaaaccagaagcacagtatctgtccgagaaggtcaaggagtg
gtactcctctgtggcccaccaccacattttggagaattatcatatgcctggactttcaat
gataaccctttgtacgttcaagaggacaagagacgatttgtatctcaaaacacagggaac
ttgtacattgccaaagtagaaccatctgatgtgggcaattatacttgctttgtcacaaac
aaagatgcccatagaagtgtccaaggtccacctacgcctttagtgcagcgcactgatggt
gtcatgggggaatatgagccaaagattgaagtgcgttttcctgaaacaatacaagctgca
aaggattcatctgtaaaactggaatgctttgcccttggaaatccagtccctgatattagt
tggaggaggttggatggaagcccgatgccagggaaagtcaagtacagcaaatcccaagcc
atccttgaaatccccaagttccaacaagaggatgaaggcttctatgagtgtgtcgcaggg
aaccttcgaggaagaaaccttgcaaagggtcaactcattttctatgctcctccagaatgg
gaacgaaaaatccaaaatacatacctttctatctatgacagtttgttttgggaatgcaaa
gctactggaaatccaaatccttcgtacacgtggctaaagaatggtgaacgtctcaacaca
gaagagagaattcagattgaaaatgggactcttatcatcaccatgctgaatgtgtcagac
tcgggtatctaccagtgtgctgcagaaaacaaatatcagacaatttatgcaaatgcagaa
ctgagagttttagcctcacctccagatttctcaaaaaatcccattaaaaaaatttcagtt
gttcaagttggtggtgacatttctatcgaatgcaaaccaaatgctttccccaaagcatct
atttcctggaaaaaaggagcagagaacctgaagcaaagtaaaagagtttttttcttggag
gatggcagccttaagatagtcaatgttaccagatcagatgctgggtcctacacctgtgta
gccacaaatcaatttggcaatgggaaaagcagtggcagtctcatcgtgaaagagaaaaca
gtcattacagtaccaccatctaaaatggatgttacagttggagagagtattgtcttaccc
tgccaagtatctcatgaccccaccatggaagttctatttgtttggtactttaatggagat
ctcatagatttaaagaaaggagtggctcattttgaacgaattggaggagaatctgttggg
gatttgatgataaggaatattcaattaggccattcaggaaaatatctatgcacagtacaa
acaacactagaacgcttgtctgctgtcgctgatatcattgtgagaggtccgcctggtccc
ccagaagatgtaaaagtggagcatatctcaagtaccacctcccagctcagctggagacct
ggtcctgataataacagccccattcaaatttttactattcaaactcgaacacccttttct
gtgggttggcaagcagttgctacagtcccagaaattctcaatggacagacgtacaatgca
acagtcgttggtttgagtccttgggtggaatatgaatttcgtgttgttgctgggaacaat
attgggattggagagccaagcaaaccatcagagttgctgagaaccaaagcatcagtcccc
agtgtggcaccagtaaatatcaatggaggcggtggaagcagatcggaacttgtcattacg
tgggagtccattccagaagaactacagaacggagagggatttggatatatcatcatgttc
cggccagtgggctcagcaacctggatgaaagaaagggtggctcttgtagaatcatcaaag
ttcatctacagaaatgaaagcatcatgcccctgtctccctttgaagtcaaagtgggagtg
tacaataatgaaggagaaggatccctgagtaccgtgtccattgtctactctggggaagat
gaacctcagctgcccccaagaggaacttctgtccagagtgtttctgcttcagaaatggag
gtttcttggaatgccattgcttggaatagaaacactggaagagtgctgggctatgaggtc
ttatactggacagacaactccaaagaatctatgattggtaaaattagagtcagtggaaat
gtcacaaccaagaacatcacagggctaagagctaatacgatttactttgcctccgtgaga
gcctacaacactgcagggactggaccttcaagtccaccagttaatgtcaccaccaaaaag
tcccctcctagccaaccaccagcaaacattgcctggaagctgtcaaattctaaattatgc
ttgaattgggagcatgtaaaaactatggaaaatgagtctgaagtgctgggctacaagatc
ctctatcggcagaaccgacagagtaaaactcatgttttggaaacaaataacacatcagct
gagcttctggttccatttgaagaagactacttaatcgaaatcagaacggtcagtgatggt
ggagatggaagtagtagtgaggaaatcagaattccgaaaatgtcaagtttgagttccacg
ggagttcagatcttgaagcccagtacccagttcctgtcaatggctggggttttttactgt
tttgctattcaaccattttcatga
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