Arvicanthis niloticus (African grass rat): 117715435
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Entry
117715435 CDS
T08817
Symbol
Usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117715435 (Usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117715435 (Usp39)
Spliceosome [BR:
anu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117715435 (Usp39)
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GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117715435
NCBI-ProteinID:
XP_034368135
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Position
9:complement(13028700..13054851)
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AA seq
564 aa
AA seq
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MSSRSKRQSHGSTRGKRESESRGSSGRIKKERDREKEPEAASSRGSPVRVKREAEPAARE
IPAPALPVVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFE
KLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEI
IDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQ
ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ
AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKRKTIVNDVFQGSMRIFTKKLP
HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK
FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR
EYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQM
ITLSEAYIQIWKRRDNDETNQQGA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccggtccaagcggcagtctcatggttccacccgtgggaagcgcgagtccgag
tctcgaggcagctcgggtcgcatcaagaaggagcgagaccgcgagaaggagcccgaggcg
gcgagctcccggggtagcccggtccgcgtgaagcgggaggccgagccagctgcgcgagag
atcccggcgcccgcgctcccggtcgtgcgggtgaagcgtgagcgcgaggctgacgaggat
tcggagcccgagcgggaggtgcgagcaaagaatggccgagtggattctgaagaccggagg
agtcgtcactgtccgtacttggataccattaataggagtgttctggacttcgactttgag
aaactctgttccatttctctctcgcacatcaacgcatacgcctgtctggtgtgtggcaag
tactttcaaggccggggcttaaagtctcatgcctacatccacagcgtccagttcagtcac
catgtgttcctcaacctccacactctcaagttttactgccttcctgacaactatgagatc
atcgactcctcgctggaggatatcacgtatgtgttgaagcctactttcacaaagcagcaa
attgcaaacttggacaagcaagccaaattgtcccgggcatatgatggtaccacttatctg
ccagggattgtgggactgaacaacataaaagccaacgactatgcaaatgctgtgctgcag
gctctgtctaatgttcctcctcttcggaactacttcctggaggaagacaattataagaac
atcaagcgtccgccaggggatatcatgttcttgttggtccagcgttttggagaactgatg
agaaagctttggaacccccgaaacttcaaggcacatgtttctcctcatgagatgcttcag
gctgttgtactttgcagcaagaagacttttcaaattaccaaacaaggggatggagttgac
ttcctgtcttggtttctgaatgctctgcactcagctctgggaggcaccaagaagaagaga
aagactattgtgaatgatgttttccagggatcaatgagaattttcaccaaaaagcttcct
catcctgacctgccagcagaagagaaagagcagctgctccataacgacgagtaccaggag
acgatggtggagtccacgttcatgtacctgacgctcgaccttcccactgccccgctctac
aaggacgagaaggagcagctcatcatcccccaggtgccactcttcaacatcctggccaag
ttcaacggcatcacagagaaggaatacaagacttacaaggagaacttcctgaagcgattc
caactcaccaagctgcctccgtatctaatcttttgtatcaagagatttactaagaacaac
ttctttgtggagaagaacccaacaattgtcaacttcccgatcacaaatgtggatctgaga
gaatacttatctgaagaagtccaagcagtccacaagaacaccacctatgatctcattgcc
aacattgtgcatgatggcaagccttctgagggctcctacaggatccatgtgcttcatcat
gggactggcaagtggtatgaattacaagacctccaggtgacggacattctgccgcagatg
atcacgctgtctgaggcgtacattcagatttggaagaggcgggataatgatgaaaccaac
cagcagggggcttga
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