Arvicanthis niloticus (African grass rat): 117715568
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Entry
117715568 CDS
T08817
Symbol
Sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117715568 (Sox5)
Transcription factors [BR:
anu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117715568 (Sox5)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
117715568
NCBI-ProteinID:
XP_034368326
EnsemblRapid:
ENSANLG00005023915
LinkDB
All DBs
Position
9:complement(80749965..81120057)
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AA seq
729 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHEVDGN
KVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKGSLADVVDTLKQRKMEEMI
KNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQ
LLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQ
LPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLG
PLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQP
LNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHD
AVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGLSNCRTEKEKTTLESLTQQLAVKQNE
EGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKI
LQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCL
VDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSE
HSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYEEYDEEEEDPDVDYGSDS
ENHIAGQAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggagacagatggagaggtagccatggtgacaagcagacagaaagtggaa
gaggaggagagtgagaggctcccagcctttcaccttcccttacatgaagtcgatggcaat
aaagttatgtcttcgttagctccctacaactcatctacctcaccccagaaggcggaagaa
ggtgggcgacagagcggtgagtccgtgtcaagcgcagccctgggaactccagaaaggcgc
aagggcagcttagcagatgtggtggacaccttgaagcagaggaagatggaagagatgatc
aagaatgagccggaagacactcccagtattgaaaagctactctccaaggactggaaagac
aagctcctggcaatgggatcagggaacttcggagaaataaaagggactcctgagagcctc
gctgagaaggaacggcagctcatgggtatgatcaatcagctgaccagtctacgagagcaa
ctcctggctgcccatgatgaacagaagaagttggctgcatctcagatagagaaacagcgc
cagcagatggagctggccaagcagcaacaggagcagatcgcgaggcaacagcagcagctt
ctgcagcaacaacacaaaatcaacttgcttcagcaacagatccagcaggttcaaggtcag
ctgccgccattgatgatccccgtgttccctcctgaccagcggacccttgcagcagctgcc
caacaaggattcctccttcctcctggtttcagctacaaggctgggtgcagtgacccttac
cctgttcagctgatcccaaccaccatggcagctgctgctgcagcaacacccggcttaggc
ccactccagctgcagcagttctatgctgcccagctagccgcaatgcaggtttctccagga
gggaagctcctaggcctaccccaaggcaaccttggtgctgccgtgtctcctaccagcatt
cacacagacaagagcacaaacagcccaccacccaaaagcaaggatgaagtggcccagcca
ctgaacctatcagctaagcccaagacctctgatggcaaatcacctgcatcacccacctct
cctcacatgccagctctgagaataaacagtggggcgggccccctcaaagcctctgtccca
gcagcgttagctagtccttcagcaagagttagcacaataggttatttaaatgaccacgat
gctgtcaccaaggcaatccaagaagctcgccagatgaaggagcagctcaggcgagagcag
caagcgctggatgggaaggtggccgttgtgaacagcataggtctcagcaattgccggaca
gaaaaggaaaaaacaacactggagagcctgactcagcagttggcagttaaacagaatgaa
gaagggaaatttagccatggaatgatggatttcaatatgagtggagattctgacggaagt
gctggagtctcagagtcaagaatttacagggaatccaggggacgtggcagcaacgagccc
cacataaagcgtccaatgaatgccttcatggtgtgggcaaaagatgaacggaggaaaatc
cttcaggccttccccgacatgcacaattccaacatcagcaagatactgggatctcgctgg
aaagctatgaccaacctagagaaacagccatactacgaggagcaggcccgcctcagcaaa
cagcacctggagaagtacccggactacaagtacaagcctaggccgaagcgcacctgtctg
gtggatggcaagaagctgcgtatcggggaatacaaggccatcatgaggaacaggaggcag
gaaatgcgacagtacttcaacgttgggcaacaagcacagatccccatcgctaccgctggt
gtcgtgtaccccggggccatcgccatggcaggaatgccatcccctcacttgccctcagag
cattcgagcgtgtccagcagcccggagcccgggatgcccgtgattcagagcacttacggc
gtgaagggggaggagcctcatatcaaggaggagatccaggctgaggacatcaatggagag
atttacgaggagtacgatgaggaggaggaggacccggatgtggattatgggagtgacagc
gaaaaccacattgcaggacaagccaactga
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