Arvicanthis niloticus (African grass rat): 117715947
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Entry
117715947 CDS
T08817
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117715947 (Rc3h1)
04121 Ubiquitin system [BR:
anu04121
]
117715947 (Rc3h1)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117715947 (Rc3h1)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117715947 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117715947
NCBI-ProteinID:
XP_034368597
LinkDB
All DBs
Position
10:47703586..47759742
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILPDE
SAVDLSSRKPPALPNGIVSSGSTVTQLIPRGTDPSFDSSLKPVKLDHMSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMPVTKPIQMVPRGSQLYPAQQADVYYQDPRGSA
PAFETAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPTYLDHYSPYLQDRVINSQYGTQPQQ
YPPMYPPHYDGRRVYPAQSYTREEMFRESPIPIDIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHQEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAIAPQ
GAPTKSMNISDYSAYGAHGGWGDSPYSPHPNIPPQGHFIEREKMSMAEVVSHGKPLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVNNRLVLQREVNTLASQPQPPPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKVPTEDLTMTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDPEGGGDNNDSQRSGVVSSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcttgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccattcgaccagaccactatcaatacggac
attgagctccttcctgtgaactcagcattgctgcagctagtgggtgctcagatccctgag
caacagcccattactttatgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgtccaatgcagaggaaacttgtgactctg
gtccattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagtcacagagctcattctccagcaccagaatcctcagcaactctct
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaagctctgaagctggtcttgctggccttggaagatggttctgcattgtcacggaaa
gtgttggttctttttgtggtgcaaagactggaaccacgttttcctcaagcctctaaaacc
agcattggacatgttgttcagctcctctacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaggaagaatttaggacttatgaagctctgagg
cgagaacatgactcccagatagtgcagattgctatggaagctggcttaaggattgcacca
gaccagtggtcctctttgctttatggggaccagtctcacaaatctcatatgcagtctatt
attgacaagttgcagacccctgcctcttttgcacagagtgttcaggagctaacaattgct
ctccagcggactggagacccagcgaatttgaaccgactaagaccccatttggagctacta
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatgga
ctggttgctgtacgtacagtagtacatggactggttgattatatccagaaccacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatataaaacatacatgtgtcga
gatatgaagcaaaggggaggatgtcctcgtggggccagctgtacgtttgcacattcacag
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccttgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatacttcccgatgaa
agtgcagtggatttgtcgagcagaaaacctcctgcactcccaaatggaattgtatcgtca
gggagcacagtgacacagctgattccacgtgggacagaccccagctttgattcttctctg
aaaccagtaaagctagaccacatgagcagcagtgctccagggtcccctcctgacctgctg
gaatctgctcctaagagtatttctgccttacctgtgaacccacatcctgtacctccaagg
ggaccaacagatctgcctcccatgcctgtcaccaaaccaattcagatggtacctcgaggg
tctcagctatatccagcacaacaagcagatgtttattatcaggatcctcgaggaagtgcc
ccagcttttgagacagcaccttatcagcagggtatgtactatactccaccaccatgtgtg
tcccgttttgtccgacctccaccgtctgctcctgaacctggtcctacatacttggatcat
tattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacagcag
tacccacctatgtacccacctcactacgatggccgccgtgtatatcctgctcagtcttac
acaagagaggagatgttccgggaaagccctatacccattgacattccatctgcagcagtg
ccatcctatgtaccggagtccagagaacggtaccaacaggtagagggttactacccagtg
gctcctcatccagctcagatcagaccttcataccccagggatcctccttatagtcggctt
cctcctccccaaccccatcctagtctggatgagctacatcgaaggcggaaggaaataatg
gcccagctagaggaaagaaaagtcatctctccacctccttttgcaccttcaccaacattg
cctcctgcattccatcaagaggaatttttggatgaagacttgaaggtagccggaaaatac
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggagatgatgaat
gtagaaagtaaaggaatgagagaccagaggttggatcttcagagaagagcagtggaaact
agtgatgatgatctcatcccatttggagaccgaccaacagtatctcgatttggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaagctatcgcacctcag
ggagcacccacaaaatctatgaacatttccgattacagtgcatatggagctcatggtggc
tggggagattctccatactcacctcatccaaacatacctcctcagggacacttcattgag
agggagaaaatgtctatggcagaagtggtcagtcatggaaaaccccttctgtctgctgag
agagaacaattacggctagaattgcagcaactgaaccatcagatcagccagcagacccag
ctacgtggactagaggctgttaataaccggctggtgttacagagggaggtgaacaccctg
gcaagccaaccacagccccctccactacctcccaaatggcctggaatgatctcaagtgag
cagctaagcttagaactgcatcaggtggaaagggaaattgggaagaggacccgggagttg
agtatggagaaccagtgttctgtagacatgaaaagcaaactgggtacaagtaagcaagca
gaaaatggacagccagagccacaaaacaaggtccccactgaggaccttacaatgacattc
agtgatgtaccaaatggatcagccttgacacaagagaatctcagcctcctatcaaacaag
accagctctttgaacctgtcagaagaccctgagggaggaggagataacaatgattcccag
agatcaggagttgtttccagttctgctccctag
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integrated database retrieval system
