Arvicanthis niloticus (African grass rat): 117716335
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Entry
117716335 CDS
T08817
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03410
Base excision repair
anu04140
Autophagy - animal
anu04217
Necroptosis
anu04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117716335
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117716335
09143 Cell growth and death
04217 Necroptosis
117716335
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
117716335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
anu03036
]
117716335
03400 DNA repair and recombination proteins [BR:
anu03400
]
117716335
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117716335
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
117716335
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
117716335
MMR (mismatch excision repair)
Other MMR factors
117716335
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117716335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
117716335
NCBI-ProteinID:
XP_034369268
LinkDB
All DBs
Position
10:50642136..50643327
Genome browser
AA seq
178 aa
AA seq
DB search
MGKGDTKKPRGKMSSYAFFVQTCREERKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
PIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGGSQG
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatactaagaagccgagaggcaaaatgtcctcatatgcattctttgtg
caaacctgccgggaggagcgcaagaagaagcacccagatgcttctgtcaacttctcagag
ttctccaagaagtgctcagagaggtggaagactatgtctgctaaagaaaaggggaaattt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacatccct
cccaaaggggagaccaaaaagaagttcaaggaccccaatgcacccaagaggcctccttcg
gccttcttcctgttctgttctgagtaccgcccaaaaatcaaaggtgagcatcctggctta
cccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgccgcggatgac
aagcagccctacgagaagaaggctgccaagctgaaggagaagtatgaaaaggatattgct
gcctacagagctaaaggaaaacctgatgcagcgaaaaaggggggtagtcaaggctga
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