Arvicanthis niloticus (African grass rat): 117716924
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Entry
117716924 CDS
T08817
Symbol
Tmc1
Name
(RefSeq) transmembrane channel-like protein 1 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117716924 (Tmc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
anu02000
]
117716924 (Tmc1)
03037 Cilium and associated proteins [BR:
anu03037
]
117716924 (Tmc1)
Transporters [BR:
anu02000
]
Other transporters
Pores ion channels [TC:
1
]
117716924 (Tmc1)
Cilium and associated proteins [BR:
anu03037
]
Other cilia and associated proteins
Stereociliary proteins
117716924 (Tmc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Ac76
Toddler
Motif
Other DBs
NCBI-GeneID:
117716924
NCBI-ProteinID:
XP_076784286
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All DBs
Position
1:complement(128542108..128701192)
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AA seq
758 aa
AA seq
DB search
MPPKKVQIQVEEKEDDTEESSSEEEEEKLPRRESLRPKRKRTRDVINEDDPEPEPEDEET
RKAREKERRRRLRRGAEEEEEIDEEELERLKALLDENRQMIATVKCKPWKMEKKIEVLKE
AKKFVSENEGALGKGKGKKWFAFKMMMAKKWAKFLRDFENFKAACVPWENKIKAIESQFG
SSVASYFLFLRWMYGVNMVLFILTFSLIMLPEYLWGLPYGSLPRKTVPRAEEASAANFGV
LYDFNGLAQYSVLFYGYYDNKRTIGWLNFRLPLSYFLVGIMCIGYSFLVVLKAMTKNIGD
DGGGDDNTFNFSWKVFCSWDYLIGNPETADNKFNSITMNFKEAIIEERAAQVEENIHLIR
FLRFLANFFVFLTLGASGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFCPT
LFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLW
EANMIKAYNESLSGNTTGPPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIG
DFLRACFVRFCNYCWCWDLEYGYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINI
LRLHTSMYFQCWAVMCCNVPEARVFKASRSNNFYLGMLLLILFLSTMPVLYMIVSLPPSF
DCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPGLVIAVILVMVLTIYYLNATAKG
QKAANLDLKKKMKQQALENKMRNKKMAAARAAAAAGGQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgccacccaaaaaagtgcaaatccaagtggaggaaaaagaagatgatacagaagaaagc
tcaagtgaagaagaagaagaaaaactacccagaagagagagcttgagaccaaagaggaaa
cggaccagagatgtcatcaatgaggatgatccagaaccagagccagaggatgaagaaaca
agaaaggcaagagaaaaagaaaggcggagaaggctgaggagaggagcggaggaggaagaa
gaaattgacgaagaggaattagaacgattaaaagcactgctagatgaaaatagacaaatg
attgctactgtcaaatgtaaaccttggaaaatggagaagaaaattgaagttctcaaggaa
gcaaagaaatttgtgagtgagaatgaaggagctcttgggaaaggaaagggaaagaagtgg
tttgcatttaagatgatgatggccaagaaatgggcaaaattcctccgtgattttgagaac
ttcaaagctgcttgcgtcccctgggaaaacaaaatcaaggcaattgaaagtcagtttggt
tcctcagtggcctcctacttcttgttcctgaggtggatgtatggcgtcaacatggttctc
tttatactaaccttcagcctcatcatgttacccgagtacctctggggtttaccatatggc
agcttacctaggaaaacagtcccaagagctgaagaggcatctgcagccaactttggtgtg
ttgtatgacttcaacggtctggcacagtactcagtcctcttttatggctattacgacaat
aaacgcacgatcggatggctgaatttccggctacctctttcctacttcctggtggggatt
atgtgcattggatacagctttctggttgtcctcaaagcgatgaccaaaaatattggtgac
gatggtggtggcgatgacaacactttcaacttcagctggaaggtgttctgcagctgggac
tatctgattggtaaccctgaaacagctgacaacaaatttaattctatcacgatgaacttt
aaggaagccatcatagaagagcgagcagcccaggtggaggagaatatccacctcatcaga
ttcctgaggtttcttgctaacttcttcgtgttcctaacacttggtgcaagtggatacctc
atcttttgggctgtgaagcgatcccaggaatttgcccagcaagatcctgacacccttggg
tggtgggaaaaaaatgaaatgaacatggttatgtccctcctggggatgttctgtcccaca
ctgtttgacttatttgctgaactggaagattaccatcctctcattgctctgaagtggctc
ctggggcgtatttttgctcttcttctaggcaacttgtatgttttcattcttgccttgatg
gatgagattaacaacaagattgaagaggagaagctcgtgaaggccaatatcaccctgtgg
gaagccaacatgattaaggcttacaatgaatctctctctgggaacaccacaggaccaccc
ttttttgttcatcctgctgatgtacctcgaggtccctgctgggaaacaatggtggggcag
gaatttgtacgtcttactgtttctgatgttctgaccacttatgtcactatcctcattggt
gacttcctcagagcatgcttcgtgaggttctgcaattactgctggtgctgggacttagaa
tatggatatccttcatacacagaattcgacatcagtggcaacgtccttgctctgatcttc
aaccaaggcatgatctggatgggctccttctttgctcctagcctcccaggcatcaacatc
ctccgactccacacatccatgtatttccagtgctgggctgtgatgtgctgcaatgttccc
gaggccagggtcttcaaagcttccagatccaacaacttctaccttggcatgctgctactc
atcctcttcctgtccaccatgcctgtcctgtacatgattgtctccctcccaccatctttt
gattgtgggcccttcagtggtaaaaacagaatgtttgaagtcattggtgagaccctggaa
cacgatttcccaagctggatggcgaagatcctgaggcagctttctaaccccggccttgtc
attgctgtcattctggtgatggttttgaccatctattatctcaatgctactgccaagggc
cagaaagcagcaaatctggatctcaaaaagaagatgaaacagcaagctttggagaacaaa
atgcgaaacaagaaaatggcagccgctcgagcagctgcagctgctggtggccagtaa
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