Arvicanthis niloticus (African grass rat): 117716991
Help
Entry
117716991 CDS
T08817
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117716991 (Ddx1)
03016 Transfer RNA biogenesis [BR:
anu03016
]
117716991 (Ddx1)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117716991 (Ddx1)
Spliceosome [BR:
anu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117716991 (Ddx1)
Transfer RNA biogenesis [BR:
anu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117716991 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
117716991
NCBI-ProteinID:
XP_034370062
LinkDB
All DBs
Position
11:46081421..46116026
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALTKAPDSYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgaaatgggtgttatgcccgagattgcacaagctgtggaggagatg
gattggcttctaccaactgatatccaggcagaatctatcccattgatcctaggaggaggt
gatgtacttatggctgcagaaacaggaagtggaaaaactggtgcatttagtattccagtt
atccagatagtgtatgaaactctgaaagaccaacaagaaggaaagaaagggaaaacaact
attaaaaccggtgcttcggtgctcaacaagtggcaaatgaacccatatgatagagggtct
gcttttgcaatcgggtcagatggtctgtgttgtcagagcagagaagtgaaggagtggcat
ggatgcagagcgaccagaggactgctgaaagggaaacactactatgaggtgtcctgtcat
gaccaaggtctatgcagagttgggtggtctaccatgcaggcttccttagacctaggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatctcataataaacaatttgat
aattatggagaggaattcactatgcatgataccattggatgttacttagatattgataaa
gggcatgtgaagttctctaagaatggaaaggatcttggtctggcatttgaaataccagca
catataaaaaaccaagccctcttccctgcctgtgttttgaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctcttaccaag
gccccagatagttacatcgtcaaatcgcagcacacaggtaatgcacaggtgtcacaaaca
aaatttctccctaatgctccaaaagctctcattgtggaaccttccagagagttagctgaa
caaaccttgaacaacgtcaagcagtttaagaagtatatcgataatcctaaattacgggag
cttctcataattggtggtgttgcagctcgggatcagctctctgttctggataatggggtt
gatattgtcgtcggtactccaggaagattagatgatttggtgtcaactggaaagctcaac
ctgtctcaagttagattcctggtcctggatgaagcagatgggcttctctctcaaggttat
tctgactttattaacagaatgcacagccagattcctcagattacttctgatgggaaaaga
cttcaggtgattgtttgctctgctactctgcattcttttgatgtaaagaaactatctgag
aagataatgcattttcccacgtgggtcgatttgaaaggagaagattctgttccagatact
gtgcatcatgtcgttgtccctgtgaaccccaaaactgataagctctgggaaaggctgggg
aagaaccacattcgaactgatgatgtacatgcaaaggataacacaagacctggtgctaac
agtccagagatgtggtctgaagctattaaaatactgaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgtagaactaaaattgactgtgat
aacttggagcagtactttatgcagcaaggaggaggacctgataaaaaaggacaccaattc
tcatgtgtatgtcttcatggtgacagaaagcctcatgagagaaagcaaaacttggaacgg
tttaagaaaggagacgtaagattcttgatttgcacagatgtagctgctagaggaattgat
atccatggtgttccttatgttataaatgtcaccctgcctgatgaaaagcagaattatgtg
caccggattggcagagtgggacgggctgaaaggatgggcctggctatttccctggtggca
acagagaaagaaaaggtttggtatcatgtatgcagcaaccgtgggaagggatgctataac
actagactcaaggaagatggcggctgtactatctggtacaatgaaatgcagctactttcc
gagatagaagaacacctgaactgtaccatttcccaggttgagccagatataaaggttcca
gtggatgagtttgatgggaaagttacatatggtcaaaagagagctgctggcggtggaaac
tataaaggccatgtggatatcctggcacctactgttcaagagttggctgcccttgaaaag
gaagcacagacatctttcctacaccttggctaccttcccaaccagctgttccgaaccttc
tga
DBGET
integrated database retrieval system
