Arvicanthis niloticus (African grass rat): 117717002
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Entry
117717002 CDS
T08817
Symbol
Trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117717002 (Trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
117717002 (Trim54)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117717002 (Trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
TRIM_CC
PHP
DUF349
Sina_RING
CoiA_N
DD_DDX21-DDX50
COG2_C
FlgN
DUF1421
DUF5799
UvrD_C
Zn_ribbon_FGT1_2
SpoIISA_toxin
GH123_cat
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
117717002
NCBI-ProteinID:
XP_034370090
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All DBs
Position
11:complement(54399839..54420321)
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AA seq
364 aa
AA seq
DB search
MNFTVGFKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQQLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFETLCAVLEERKGELLQALAREQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAG
RPEPGYESMEQFSVSVEHVAEMLRTIDFQPGAAGDEEDDEVALDGEEGNAGLEEERLDGP
EGLH
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcacggtgggtttcaagccgctgctaggggatgcacacaacatggacaacctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtgatcctg
ccctgccaacacaacctgtgccgcaagtgtgccaacgatgtcttccaggcctcgaaccct
ctgtggcaatcccggggctccacaacggtgtcttcgggaggacgtttccgctgcccatct
tgtaggcacgaggttgtcctagacaggcatggggtctacggcctgcagcggaacctgctg
gtggagaatatcattgacatctacaaacaggaatcctccaggccgctgcactccaaggct
gaacagcagctcatgtgtgaggagcacgaggatgagaagatcaacatctactgcctgagc
tgtgaggtgcccacctgctctctctgcaaggtctttggtgcccacaaggactgtgaggtg
gcccctctgcccaccatttacaaacgccagaagagtgagctgagcgacggcatcgcaatg
ctggtggcaggcaatgaccgtgtgcaggcagtgatcacgcagatggaggaggtgtgccag
accattgaggacaacagccgcagacagaagcaactgttaaaccagaggttcgagacccta
tgcgcggttttggaggaacgcaagggcgagctgcttcaagcgctggcccgggagcaagag
gagaagctgcagcgcgtgcggggcctcatccgtcagtacggagaccacttggaggcctcc
tctaagctggtggagtctgccatccagtccatggaggagccgcagatggctctctacctc
cagcaggccaaggagcttatcaacaaggtcggggcaatgtcgaaggtggagctggcagga
cggccggagccaggctatgagagcatggagcaattttccgtgagcgtggagcacgtggcc
gaaatgttgcggaccatcgacttccagcccggcgcagctggggatgaagaggatgacgag
gtggctttggacggggaagaaggcaacgcggggctggaggaggagcggctggacgggcca
gaaggactgcactga
DBGET
integrated database retrieval system
