Arvicanthis niloticus (African grass rat): 117717040
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Entry
117717040 CDS
T08817
Symbol
Pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117717040 (Pnn)
03015 mRNA surveillance pathway
117717040 (Pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117717040 (Pnn)
03041 Spliceosome [BR:
anu03041
]
117717040 (Pnn)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117717040 (Pnn)
Spliceosome [BR:
anu03041
]
Complex C
Other components
EJC/TREX
117717040 (Pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
117717040
NCBI-ProteinID:
XP_034370139
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All DBs
Position
11:complement(10089386..10097112)
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AA seq
726 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAVEEEEKEAGVVHSDAEKEQEEEEHKQ
EMEAKMEEETEVREGEKQQDSQPEEVMDVLEMVDTVKHVTAEQEVMETNQVESIDPSENE
TSKELEPEMEFDVEPDKECKSLSPGKENINSLEVEKESEEKEEKEDKEPEPHPEPMAQPQ
PPPQPLPQSQPHSQPHSQPQPVLQSQPLCQPETVPLAVLQPPPQVIQEQGNLLPERKDFP
IESVKLPEVPIEPVLTVHSENKSKNKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSS
SGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVD
RKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSD
RKDKRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgccgtgagagctttgcaggagcagctagaaaaggccaaagagagcctcaag
aatgtggacgagaacatccgcaagctcaccgggcgggacccgaatgatgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggtcgaggtagtttattg
ctaaggcgtggattctcagatagtggaggaggacccccagccaaacagagagacctggaa
ggggcagtcagtaggctgggtggggagcgtcggacaagaagagaatcacgccaagaaagt
gacccagaagatgatgatgttaaaaagccagcactgcaatcttccgttgtagctacctcc
aaagaacgcacacgtagagaccttatccaggatcaaaacatggatgaaaagggaaagcaa
aggaaccggcgaatatttggcttgttgatgggcacccttcagaaatttaaacaagaatcc
actgttgctactgaacggcaaaagagacgccaagaaattgaacaaaaacttgaagttcag
gctgaggaagagagaaagcaggttgaaaatgagaggagagagttgtttgaggagagacgc
gctaaacagacagaactgcggcttctggagcagaaggttgagcttgcgcagctgcaagaa
gaatggaatgaacataatgccaagataattaagtacataagaaccaagacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaagctaatagaagagtcacag
agaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaggcagtagaggaagaggagaag
gaagcaggtgtagttcatagtgatgcagagaaagaacaggaggaggaggaacacaagcag
gaaatggaggctaagatggaggaggagactgaggtaagagaaggtgagaagcagcaggat
agtcagccagaagaagttatggatgtgttagagatggttgacactgtcaaacatgtcact
gctgagcaggaagtaatggaaactaatcaagttgaaagtatagacccttcagagaatgaa
actagcaaagagttggagccagagatggaatttgatgttgagccagataaagaatgtaaa
tctctttctcctggaaaagagaatattaattctctggaagtggaaaaggagtctgaggaa
aaagaggaaaaagaagataaagaacctgagccccatcctgagcctatggctcagcctcag
cccccgcctcagcccctgccccagagccagccccactctcagccccactctcagccccaa
cctgtactccagtcccagcctctctgtcagcctgagactgtgccgttagctgttttgcag
cctccacctcaggttattcaggagcaggggaatctactacctgagcggaaggattttcct
atagagtctgtaaaactccctgaggtgcctatagagccagtcttgacagttcattcagaa
aacaaaagcaaaaataagactaggagcagaagcaggggccgagcaagaaataaaacaagc
aagagtagaagtcgcagcagcagcagcagtagctccagtagcagctctactagtagcagc
agtgggagcagctccagcagtggcagcagtagtagtcgaagcagctccagtagcagctcc
agcacgagtgggagcagcagcagagacagcagcagcagcactagcagtagcagtgagagt
aggagtcgcagtaggggccgaggacataaccgagatagaaagcacagaaggagcgtggac
cggaagcgaagggatacttcaggactagaaagaagtcacaagtcttcaaaaggtggtagt
agtagagatacaaaaggatcaaaggataagaattctcgatctgacagaaaaaggtctata
tcagagagtagtcgatcaggcaagagatcttcaagaagtgaaagagaccgaaaatcagac
aggaaagacaaaaggcgttaa
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integrated database retrieval system
