Arvicanthis niloticus (African grass rat): 117717594
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Entry
117717594 CDS
T08817
Symbol
Vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117717594 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117717594 (Vps8)
Membrane trafficking [BR:
anu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117717594 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
zf-C3H2C3
zf-RING_5
zf-C3HC4
EIF3I
Beta-prop_HPS5
PHD
Motif
Other DBs
NCBI-GeneID:
117717594
NCBI-ProteinID:
XP_034370733
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All DBs
Position
12:8548224..8766881
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AA seq
1429 aa
AA seq
DB search
MENEPDQENLEQNPCARTMEEELKKSFNLEASLPKLSCIDLDKELEFRNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGK
DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
VNNCVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
VEKLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
GGQIFYLGTKSVYVMSLRSWRERMDHLLKQDCLTEALALAWSFHEGRAKAVVGLSGDVIK
RKAVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFGQ
MYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVV
MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTL
LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEETRLIRMA
EKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
AMDHMEELVSLKPCKAAELVATHFSGQIEVVIGQLQNQLLLFKFLRSLLDPREGVHVNQE
LLQIPPCITEQFIELLCQFTPDQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
DVHGAFLLLLERLQSRLQEMTRQDENTKEDIVLKGVEDTVVETIALCQRNSQHLNQQQRE
ALWFPLLEAMMAPQKLCSSAAPPHLHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIY
GKGKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVCRGLNPKQDYCS
ICLQQYKRRQEMADEIIVFSCGHLYHSFCLQSKECTLEVEGQTRWTCYKCSSSNKAGKLS
ENPSENKKGRIASSQVKMSPSYHQSKGDPPARKANSEPVLDPQQMQAFDQLCRLYRGSSR
LALLMELSQNRGGDSYRPFAGSQSGPAFNSVFQNENFQLQLAPPPVVED
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccaggagaatttggaacagaacccgtgtgcccggactatggaa
gaagagttgaagaagtcttttaacttagaagcttcccttccaaaactctcgtgcatagat
ctggataaggagctggagttcagaaatgacctgatcgatgataaggagtttgatattcct
caggtggatactcctccaactctggaaagcattcttaatgagactgacgatgaagatgag
tcttttgttctggaggaccctacgttgttaaacgtcgacaccattgactctcactcatat
gatacctcatctgtggcaagctcagacagcggcgaccgggccaacctaaagaggaagaag
aagttacccgattctttctcactgcatgggtcggttatgcgacattcacttctaaagggg
atatctgcacagatcgtgtccgcagccgacaaagtagatgctggcttgcctacagcaatt
gcagtgtccagtctgatagcagtggggacatctcatggattggctttaatatttggaaaa
gatcagaatcaagcactgcggctctgcctcggtagcaccagtgtcggagggcagtatgga
gctatctctgccctcagcatcaacaacgactgctcaagacttctttgtggctttgctaaa
ggacagatcaccatgtgggatttggccagtggaaaacttctcagatcaataacagatgct
catcctccagggactgcaatcttgcacatcaagttcacagatgatccaactcttgcgatt
tgcaatgacagcggaggctctgtttttgaactaacatttaagagagttatgggcgtgaga
acgtgtgagtctaggtgcctgttcagcggctccaagggcgaagtctgctgcattgagccc
ctgcactccaagcccgagttgaaagaccatcccatcacacagttttcactgctggccatg
gcctctttaacaaagatattggtcattgggttgaaaccatccctgaaagtatggatgact
ttcccctatggacggatggatccttccagtgttccattgctggcctggcacttcgtggct
gtgaataactgtgtgaaccccatgctcgccttctgcagaggcgatatggttcactttctc
ctggttaagagagatgagtcgggcgcaatacacgtcaccaaacaaaagcaccttcacctg
tactacgatctgatcaacttcacatggataaactcacgcacggttgtgcttttagacagc
gtggagaagctgcatgtgattgatcggcagacacaggaagaactggagacaatggagatc
tcagaagtccagctggtctacaacagcagccacttcaagtcactggccacaggaggaaac
gttagccaggccctggctttggtgggagagaaggcttgctatcagtccatcagtagctat
ggaggacagatcttctacctggggacaaagtctgtgtacgtgatgtcgctgcggagctgg
agggagaggatggaccatcttctgaaacaggattgcctcacggaagccttggcccttgca
tggtcttttcatgaaggaagggccaaagcagtagtggggctgtcaggagatgtcatcaag
aggaaggccgtggttgcggatcggatggtagagatcctgtttcattatgcagaccgggct
ctgaaaaagtgcccagaccagggaaaaatccaagtgatggagcagcactttcaggatacg
gtgccagtaatagtggactactgccttctgctccagcgaaaggatcttctatttggccaa
atgtatgacaaattaagtgaaaattccgtggcaaaaggcgtgtttttggagtgccttgag
ccatatatcttaagtgataaactggtggggattacaccccaggtcatgaaagacttgatt
gttcatttccaagataaaaaactaatggagaatgtggaagccctcattgtccacatggac
atcaccagcctggacattcagcaggtggttctcatgtgttgggaaaatcgtctgtatgat
gccatgatctatgtctacaacagaggcatgaatgagtttatcagtccaatggagaagctt
ttcaaagtcatcgccccacctctgaacgcagggaagactcttacagatgagcaagttgtt
atgggcaacaagcttctggtgtacatcagctgttgcctggctggtcgtgcctaccctctt
ggtgacattccagaagatcttgttcccttggttaaaaaccaggtctttgagtttctgatt
cgcctgcattctgtagaagcatcctccgaggaagaagtctatccttatgttcggactttg
ctacattttgacacaagagaatttctgaatgtgttggcactgacctttgaagactttaaa
aatgataagcaagccgtggaataccagcagcgcattgtggatattttattaaaagttatg
gtggagaattcagattttaccccatcacaagtggggtgtctctttacattcctcgctcgg
cagctcgcaaagcctgacaataccttgtttgtgaacagaaccctctttgatcaagtcctg
gagttcctctgtagccctgacgatgactctcgccactctgaaagacagcaggtcctttta
gaattgctgcaggccggaggcattgttcaatttgaagagactcggctcatccgcatggca
gaaaaggcagaattctatcaaatctgtgaattcatgtatgagcgagaacatcagtacgac
aagatcattgactgctacctgcacgacccgttgagagaggaagaagtcttcaattatatc
cacaacatcttatctattcctggtcacagtgctgaggagaagcagtctgtgtggcagaaa
gcaatggatcatatggaggaacttgtgtccctgaagccttgtaaagctgcagagctggtt
gctactcacttttctggacagatcgaagtagtcattggacagcttcagaaccagctcttg
cttttcaaatttttgaggagtcttcttgatccaagggaaggtgttcatgtaaatcaggag
ttgctgcagatcccgccttgcattacagagcagttcattgagctgctgtgtcagtttact
cctgaccaagtcatagagacactgcaagtccttgagtgctaccgtctggaggaaactatt
cagattacacaaaagtatcagctccatgaagtcactgcgtatctgttggagaagaagggg
gacgttcatggcgccttcctgctgctgctggagagactgcagagcaggctgcaagagatg
acacggcaggatgaaaatacaaaggaggacatagtgctgaaaggtgttgaagataccgtg
gtagagacgattgctctttgccagagaaattcacagcatttgaatcagcagcagcgagag
gcactatggtttccactgttagaggcaatgatggcaccacagaagctgtgcagctcggct
gcgcctcctcatctgcactgtgaagctctgaagtctttgaccatgcaagttctaaacagc
atggcagcattcatcgccctcccatccatcttacagaggatcttgcaggacccaatttat
gggaaaggaaaacttggagaaattcagggccttattctggggatgctggacacctttaac
tatgagcaaaccttgctagaaacaacagccagcctcctgaaccaggatctccactggtca
ctgtgtaacctgagagcatcagtatgcagaggactcaatcccaaacaggattactgttct
atatgcttacagcagtacaaaagacgccaagaaatggctgatgaaattattgtctttagc
tgcggccatttgtatcattcattctgtctccaaagtaaggaatgtacgctagaagttgag
ggtcagacaagatggacgtgttacaaatgcagctcaagtaataaggcgggcaaactgagt
gaaaatccttcagaaaacaagaagggacggatagcctcctcacaggtaaaaatgtctccc
tcatatcatcagtccaaaggggatcctcctgccaggaaggcaaactcagaacctgttctg
gacccacagcaaatgcaagcctttgatcagctctgccggctctaccgaggaagttccagg
ctggctctccttatggagctctcccagaaccgaggtggtgacagctataggccgtttgcg
ggctcccagagcgggcctgctttcaacagcgtcttccagaacgagaacttccagctgcag
cttgcgcctccacctgtggttgaagactga
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