Arvicanthis niloticus (African grass rat): 117718521
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Entry
117718521 CDS
T08817
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117718521 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
117718521 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117718521 (Pabpc1)
03041 Spliceosome [BR:
anu03041
]
117718521 (Pabpc1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117718521 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
117718521 (Pabpc1)
Spliceosome [BR:
anu03041
]
Complex C
Other components
Complex C specific factors
117718521 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
117718521
NCBI-ProteinID:
XP_034372080
LinkDB
All DBs
Position
13:complement(15729634..15743301)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctctctgtacgtgggggacctgcacccc
gacgtgaccgaggcgatgctttacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtacgtgaacttccag
cagccggcggacgcggaacgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccatcgataataaagcactgtatgatacgttttct
gcgtttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggctccaagggctat
ggatttgtacattttgaaacacaggaagcagctgaaagagctattgagaaaatgaatggg
atgcttctaaacgatcgtaaagtgtttgttggacgatttaaatctcggaaggaacgagaa
gcagaacttggagcaagggcaaaggagttcaccaatgtttacatcaagaactttggagaa
gacatggatgatgagcgccttaaggagctctttggcaagtttgggcctgccttaagtgtg
aaagtaatgacggatgaaagtggaaaatccaaagggtttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaatggaaaggaactcaatggaaaacag
atttatgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgtgaacctttatgtaaaaaat
cttgatgatggaattgatgacgagcgtctccggaaagagttttctccatttggtacaatc
accagtgcaaaagtaatgatggagggtgggcgcagcaaagggtttggttttgtatgtttc
tcatcccctgaagaagccactaaagcagttacagagatgaatggtagaattgtggccacg
aagccactgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagaggatggcaagtgtccgagctgtgcccaaccctgtgatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaatatgcccggtgctatccgcccagctgctcctaga
ccaccgtttagtacgatgagaccagcttcctcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcctgcagctgctgctgctgca
gccactcctgctgtccgcaccgttccccagtataaatacgctgcgggagtccgcaatccc
cagcagcatctcaatgcacagccacaagttaccatgcagcagcctgctgttcatgtgcaa
ggtcaagaacctttaactgcttccatgttggcatctgcacccccgcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcacccttctcttgctggcaaa
atcactggcatgttgttggagattgataactcagaattacttcacatgcttgagtctcca
gagtctctccgttcaaaggttgatgaagctgtagctgtactacaagcccaccaagcgaaa
gaggctgcccagaaagcagtgaacagtgccactggtgttccaactgtctaa
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