Arvicanthis niloticus (African grass rat): 117718772
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Entry
117718772 CDS
T08817
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117718772 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
anu03041
]
117718772 (Prpf40b)
Spliceosome [BR:
anu03041
]
Complex A
U1 snRNP components
U1 related factors
117718772 (Prpf40b)
Complex B
117718772 (Prpf40b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
117718772
NCBI-ProteinID:
XP_034372538
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Position
13:73486348..73554422
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AA seq
895 aa
AA seq
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MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVKQESAGKPQTQQLQTLQPQPPQPQPDPPPIPPGPIPVPMALLEP
EPGRSEDCDVLEATQPLEQGFLQREEGPSSSTGQHRLPQEEEEAKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQRFLEQHERMSSSTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWME
LYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKVRKH
GRKGKKHHRKHSHSPSVSRQGSESDEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVES
GGAALGGPGSPSSHLLGSDHGLRKIKKPKKKTKKRRHKSTSPDSETDPEDKAGKESEDRE
QEQDREPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggctcccacctccttttcctcca
atggggctcccccctatgagtcagagaccaccagccattccccccatgccgcctggcata
ctgcccccaatgcttccaccaatgggggcaccgccaccacttacacagataccaggaatg
gtccctccgatgatgccggggatgctgatgccagcggtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctgggacaggccctccgagggctttgtgg
agtgagcacgtggcccctgacgggcgcatctactactacaatgctgatgataagcagtcc
gtgtgggagaagcccagcgtgctcaagtctaaggccgagctgctgctgtctcagtgtccc
tggaaggagtataagtcagacacggggaagccttactactacaacaaccagagtcaggag
tcccgatggacccggcccaaggacctggatgacctggaagccctagtcaaacaagagtct
gcaggaaaaccgcagacccagcaactacagacactacagccacaaccacctcagccacag
cctgaccctccacctatacctccgggtcccatcccagtgcccatggccctcctggaacct
gaaccaggtcgaagtgaagactgtgatgtgctggaggccacccagcccctggagcagggc
ttcctacagcgggaggagggccccagcagttctactggacagcatcggctaccacaggaa
gaggaggaagctaagccagaaccagagagatctggcctcagttggagcaaccgggagaag
gcaaagcaggcattcaaagaactgctaagggacaaggctgtcccttctaatgcttcgtgg
gaacaggccatgaagatggtagtcactgacccccgttacagtgccttgcccaaactaagt
gagaagaagcaggcgtttaatgcgtacaaggctcagcgggagaaagaggagaaggaggag
gcccggctgagagccaaggaggccaagcagacgctgcagcgtttcctggagcagcacgag
cgcatgagctccagcacccgctaccggcgggcagaacagactttcggggacctggaggtc
tgggctgtggtccctgagagggatagaaaagaagtgtatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaagccaagcagctccggcgtcgaaatatccaggccctgaag
agcatcctggatgggatgagtagtgtcaacttccaaaccacatggtcccaggcccagcag
tacctcatggataatcccagctttgctcaggaccagcagctacaaaacatggacaaagaa
gatgcacttatctgctttgaggagcatatccgagctttggagagagaggaggaggaagag
cgggaacgggcccggcttcgggagcggcgccagcaacggaagaatcgggaggcctttcag
accttcctggacgagctgcatgagacagggcagctgcattccatgtccacctggatggag
ctgtacccagcagtcagcactgacgttcgctttgccaacatgctgggccagccgggctct
actcctctggacttgttcaagttctatgtggaggagttgaaggctcgattccatgatgag
aagaagatcataaaggatattcttaaggaccggggcttctgtgtggaggtgaacacagct
tttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggacgcaggc
aacatcaagctgaccttcaatagtctgctggaaaaagcagaggcgcgggagagggaacgg
gaaaaggaggaggcccgaaggatgcggcgcagagaagctgcctttcgaagcatgctgagg
caggccgtgcctgctctggagctgggcactgcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttccgagag
ttcctgcaggtgctggagcagactgaatgccagcacctccacaccaaagtccgaaagcat
ggcagaaagggcaagaaacaccatcgcaagcattcgcactcaccctcagtgagtcggcag
ggctctgagtcagatgaagaggagctgcccccaccatccctcaggccccccaagcggagg
aggcggaacccctcagaatctggctctgagccctcctcctcacttgattcagttgaaagt
gggggtgctgctcttggaggaccaggctccccatcttcccaccttcttgggtcagatcat
ggtcttcggaaaatcaagaaaccaaaaaagaaaactaagaaaagaagacacaagtcgacc
agtcctgacagtgagacggaccctgaagacaaagctggtaaggagagtgaagacagagaa
caggaacaggacagggaaccccggcaggcagagctccctaaccgttccccaggcttcgga
atcaagaaggagaagacaggctgggacacatcagaaagtgagctgagtgagggggagctg
gagaggcgaaggcggacactcctacagcagctggacgaccaccaatga
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